Podarcis raffonei (Aeolian wall lizard): 128399433
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Entry
128399433 CDS
T09310
Symbol
TRIM28
Name
(RefSeq) transcription intermediary factor 1-beta isoform X1
KO
K08882
tripartite motif-containing protein 28 [EC:
2.3.2.27
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
praf01001
]
128399433 (TRIM28)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
praf04121
]
128399433 (TRIM28)
Enzymes [BR:
praf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128399433 (TRIM28)
Protein kinases [BR:
praf01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
128399433 (TRIM28)
Ubiquitin system [BR:
praf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
128399433 (TRIM28)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
ANCHR-like_BBOX
zf-RING_5
PHD
zf-RING_UBOX
zf-RING_2
zf-C3HC4
Prok-RING_4
YaaC
Motif
Other DBs
NCBI-GeneID:
128399433
NCBI-ProteinID:
XP_053216872
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Position
13:28839143..28870534
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AA seq
862 aa
AA seq
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MSAPATAPAPAEAAGGGGAAGDKQRSSTAAAPLNVEGIDLLEKCGVCRERLRSERDPRLL
PCLHTVCKECMKVEPAAAAAAAAGGNNKDGQVVDCPVCKHQCYLKDIVENYFLRDGATES
FGDAREANQCCTSCEDNAPATSYCVECQEPLCETCVEAHQRVKYTKEHTVRSTGSSKSQE
REKTVYCSVHKHEPLVLFCDTCDTLTCRDCQLNVHKDHQYQFLDDAVKNQRKMLASLVKR
LGDKHANLQKSTKEVRTSIRQVADVQKRVQVDVKMAILQIMKELNKRGKVLVNDAQKVTE
GQQEKLERQHWAMTKLQRHQEHILRFANWALESDNNTALLLSKKLIYFQLHRALKMIVDP
VEPHGDMKFQWDLNAWTKSAETFGQIVSERSGLLATPNAQTPQQRANATSAASGGVAVRQ
GSVPPSQGVQQMSLQTSILNKGALLQPVLPSNSQRQAIPDCYINDASASSAGQPMDMGDG
FGVEGSYSGEANVSGMKRSRGQDGEGGTVRKVPRVSLERLDVDLTSDNQPPVFKVFPGSS
TEDFNLIVIERGVQQAAAAAAAAAHLAGLPAAVKEEQMEAAIDHPASLDAKDTKPVVLPQ
DALLPEGSLAPRLISPSGSTSSAMEMQSVHSHDGTANGDEAASCRVCMKAGAVVMCDGCK
KCYHLDCHLPALLEIPSQEWKCLLCEQPVRSIEEDGTDLTPVSIDGEVKILSAADQQRCE
QVLLELLCYEPCRPLHRLSNTIEGQNTIDLTLIRAKLQRKLSPPYGSPDEFADDVWKMFR
QFNKLTEDKEDVQSIIGLQRFFEAKLSAAFGDRKFSALRDPISVDEPQESGLLPVRGSPA
TDLGEATSSKPDGSGEDEGMAT
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctcctgcgacggcccctgcccctgcggaagctgctggcggaggcggcgccgct
ggggacaagcagcgctcttccaccgccgccgccccgctcaacgtggaaggcatcgacctg
ctggagaaatgcggcgtgtgccgggagaggctgcgctccgagcgggacccgcgcctcctg
ccttgcctccacaccgtctgcaaggagtgcatgaaggtcgagcccgccgccgccgccgcg
gcagcagctggcggcaacaacaaggatggccaagtggttgactgcccagtgtgcaagcac
cagtgttacctaaaagatatagtggagaactacttcctgcgggatggtgcaacagagtct
tttggggatgccagagaagctaaccagtgctgcaccagctgtgaagacaatgccccggcc
accagctactgtgtggagtgccaagagcccctgtgcgagacctgcgtggaggctcaccag
agagtgaagtacactaaggaacacactgtccggtccacaggctcttccaaatcccaggag
agagagaagacagtgtactgctccgtccacaagcatgagccactggtgctgttctgcgac
acttgcgacaccctcacctgccgggactgccagctgaatgtgcacaaggatcaccagtac
cagttcttggacgatgcagtcaagaaccaacgcaagatgctggcctcgttggtgaagcgc
ctgggagataagcatgccaacctccagaagtccaccaaggaagtgcggacctcgatccgg
caggtggcagatgtgcagaagcgagtgcaggtggatgtgaagatggccatcctgcaaatc
atgaaggagctcaataagcggggcaaggtgctggttaatgatgcgcagaaagtcaccgaa
gggcagcaggagaaactggagagacaacattgggccatgacaaagctccaacgccaccag
gagcatatcctacgctttgcaaattgggccctggagagcgacaacaacactgctttgctg
ctttcgaagaagctgatttacttccagctgcacagggctctcaaaatgattgtcgatcct
gtggagccccatggagacatgaaattccagtgggacttaaatgcttggaccaagagcgca
gagacatttggtcagatagtctcggagcggagtggcttgctggcgacccctaatgcccag
actccccaacagcgggccaatgctacctctgctgcatctggaggagtggcagtcaggcag
ggctctgttcctccttctcagggtgtccagcagatgtctctgcagacaagcatattgaat
aagggagctctgcttcagcctgtgctgccttccaacagccagcggcaggcaatccccgac
tgctatatcaatgatgctagtgcctcttctgctggacagccaatggacatgggtgacggc
tttggcgtagaaggatcatactctggtgaagccaatgtttctggaatgaagaggtcccgc
ggccaagatggagagggtggcaccgtgcgcaaggtgccccgtgtcagtctggagcggctg
gatgtggacctgacatcggacaaccagccacctgtcttcaaggtgtttcctggttcttcc
actgaagacttcaatctcattgtgatcgaacgtggggttcagcaagctgcagctgcggca
gctgccgccgcccatttagcagggctgccagcagcagtgaaggaggagcagatggaggca
gctattgaccacccagcttctcttgacgctaaagacactaagccagtggtgctgccccag
gatgctttgcttccagaaggctccttagcgccccggctcatctcccccagtggcagcacc
agctctgctatggaaatgcagtctgttcacagccatgatggcactgccaacggggacgaa
gctgcttcctgcagagtctgcatgaaagctggtgctgtggtcatgtgtgatggctgcaag
aagtgctaccacctggattgtcacctgcctgctctcctggaaatccccagccaggaatgg
aagtgtctgttgtgtgagcagccagtgagatccattgaagaggatgggaccgacttgact
ccagtctccatagatggggaggtgaagatactgtcagctgctgaccagcagagatgtgag
caggttctccttgagttactgtgttatgagccatgccggcctctccaccgactctccaat
accatagaggggcagaacaccattgatttgaccttgatcagagccaagctgcagcggaag
ctctcgccaccctatggctctcctgatgagtttgcagatgatgtctggaagatgttcagg
cagtttaataagctgacagaggacaaggaggatgtccagtccatcattgggctgcagcgc
ttctttgaggccaagctgagcgctgcttttggcgaccggaagttctcggcactccgcgac
cccatcagtgtggatgagccgcaggaaagtggccttctccctgtccgtggctccccagcc
actgaccttggtgaggccacctcctctaagcctgatgggagtggtgaggatgagggaatg
gccacctaa
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