Podarcis raffonei (Aeolian wall lizard): 128399878
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Entry
128399878 CDS
T09310
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128399878 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
praf03041
]
128399878 (DDX42)
Enzymes [BR:
praf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128399878 (DDX42)
Spliceosome [BR:
praf03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
128399878 (DDX42)
Complex B
128399878 (DDX42)
Complex C
U2 SnRNP specific factors
128399878 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
DUF4238
Motif
Other DBs
NCBI-GeneID:
128399878
NCBI-ProteinID:
XP_053217680
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All DBs
Position
13:complement(19141341..19168889)
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AA seq
947 aa
AA seq
DB search
MSSNSSKRIADTMNWNKGGPGTKRGFGFGGFSISTGKKEEPKLPQQSHSAFGAPGSAGFG
KTPPPQLPSFYKIGSKRANFDEENAYFEDEEEDSNNVDLPYIPAENSPTRQQFHSKPPDS
DSEDDPLEAFMAEVEDQAARDMKRLEDKDKERKNTKGIRDDIEEEDDQEAYFRYMAENPT
AGVVPEEEEDNLEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFHDEHEEITSLTP
QQVVELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALS
GRDMIGIAKTGSGKTAAFIWPMLVHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRF
GKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEA
DRMFDMGFEYQVRSIASHVRPERQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANE
DITQIVEIFSSGPNKWNWLTSRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHSLGLLH
GDMDQSERNKVISDFKKGTFPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRT
GRAGEKGVAYTLLTHKDSNFAGDLVRNLEGANQHVTKELLDLAMQNAWFRKSRFKGGKGK
KLNIGGGGLGYRERPGLGSESVDRGSNSVMVNYEAYKPSSGAMGDRLSAMKAAFQSQYKS
HFVAASFSNQKTGSSSAGASGWTSAGSLNSVPSNSAQQNSARPDSPMGMAGMPKGMTGFT
SAGNLNSVPTFPTPGVQGFNSPNAGNSNREGSSGGRERYGDNRGSGRHGGDGQRHGDGSG
RHGEGQRHGEGYRHGDNRHGDSHRHGESRHAGGGSSSSRHGESRNNGDSSRNSGESRSSE
TRNTESRKDGNSRENNKADGGSSRDNNKTDGFVVPEPPKRKKSRWDS
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcaaattccagcaaacgcattgctgacaccatgaattggaacaaaggtggccct
ggcaccaagaggggctttggtttcggtggcttctccatatccactgggaagaaggaagag
ccaaaactccctcaacagtcccacagtgctttcggagcccctggttcagctgggtttgga
aagacaccaccaccacagctgccttctttttacaagattggatcaaagcgagcaaacttc
gatgaggagaatgcgtactttgaggatgaggaggaagattccaataacgttgacttgcca
tacattcccgctgagaactcccccactcggcagcagttccattccaaaccacctgactca
gacagcgaagatgacccactggaggcattcatggcagaggtggaggatcaagctgctaga
gacatgaagagattggaagacaaagacaaggaaagaaaaaatacaaagggtatacgcgat
gatattgaagaggaagatgatcaagaagcatatttccgttacatggcagaaaatcccact
gctggcgtggttccagaagaggaggaggacaacctggagtatgacagtgatggcaatcca
atagcaccatccaaaaaaatcattgaccctcttcctcctattgatcattcagagattgaa
tacccaccgtttgagaaaaatttccacgatgagcatgaagaaatcaccagcctcaccccc
cagcaagtggtggagctgcgccacaagctgaatctccgggtctctggagcagctcctcca
agaccaggaagcagttttgctcattttggttttgatgagcaacttatgcatcaaattaga
aaatcagaatacactcaacccacacctatccaatgccagggtgttccagtggccctgagt
gggagagacatgatcggtattgcaaagaccggcagtgggaaaactgcagccttcatttgg
cctatgttggttcacatcatggatcagaaggagctggagccaggagatggtcccatcgca
gtgattgtatgtccaaccagagagctgtgccagcagatccacgctgaatgcaagcgcttt
gggaaggcctacaatctacgctccgtagcagtgtatggtggaggaagcatgtgggagcag
gccaaggctctgcaggaaggagcagaaattgttgtctgcaccccaggccgtttgattgac
cacgtgaagaagaaagcaaccaaccttcagagggtcacttaccttgtgtttgatgaagcc
gacagaatgtttgacatgggtttcgaataccaagtcagatcgattgccagtcacgtgcgc
cctgaaaggcagactctactgttcagtgcaactttccggaagaagatcgagaagctcgcc
agagacattctaattgatccaatccgagtggtgcaaggagatatcggagaggcaaatgaa
gatatcactcagattgtggagatcttctcctctggccccaacaagtggaactggctgacc
agccgcctagtggagttcacctcttcggggagtgtcctcctctttgttaccaagaaggca
aatgcagaggagctggccaacaaccttaagcaggaggggcacagcctgggtctgctgcac
ggtgacatggaccagagtgaaagaaacaaggtcatctcggatttcaagaaggggaccttc
ccagttctggttgctacggatgtggcagctcgtggtctggatattccttccattaagact
gtgatcaattatgacgtggcccgtgatattgacacccacacccaccgaattggccgcacg
gggagagcaggagagaagggcgtggcctacaccctgctgactcacaaggatagcaacttc
gctggagatcttgttcggaatttggaaggagccaatcagcacgtcacaaaagagctcttg
gacttggccatgcagaatgcttggttccggaaatcacgtttcaagggagggaagggcaag
aagttaaatattggcggtggtggactggggtaccgtgagcggcctggccttggatcagag
agcgtggaccgtgggagtaacagtgtcatggttaactatgaggcatacaaaccatcctca
ggagcaatgggggaccggttgtctgcaatgaaggcagcattccagtcccagtataagagc
cattttgttgctgccagctttagcaaccagaagacgggcagctcttcagcaggtgccagt
gggtggaccagtgctggcagcttaaactccgtgccaagcaactcagcacagcagaactcg
gcaagacccgacagtcccatgggcatggcaggcatgccaaagggcatgacaggcttcaca
agcgccggaaacttaaacagcgtccccaccttcccgactcctggcgttcaggggttcaac
agtccgaacgccggcaacagcaacagagagggcagcagcggaggtagagaaaggtatggc
gacaaccggggaagcggtcgccacggcggcgatggccagcgccacggcgacgggagcggt
cgccatggtgaaggccagcgccacggggaaggctatcgccacggggacaaccgccacggg
gacagccatcgccatggggaaagccgacatgctggcggtgggagcagcagcagtcgccac
ggggaaagccggaacaatggggacagcagccggaacagcggcgaaagcagaagcagtgag
actaggaacactgagagcaggaaagatggcaacagcagggagaacaacaaggcagatgga
ggcagtagtagggacaacaacaagacagatggctttgtcgttccggagcccccaaagcgc
aagaagagtcggtgggacagctaa
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