Podarcis raffonei (Aeolian wall lizard): 128399925
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Entry
128399925 CDS
T09310
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
128399925 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
praf03021
]
128399925 (POLR1A)
Enzymes [BR:
praf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128399925 (POLR1A)
Transcription machinery [BR:
praf03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
128399925 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
HMG_box_2
Nop14
Motif
Other DBs
NCBI-GeneID:
128399925
NCBI-ProteinID:
XP_053217777
LinkDB
All DBs
Position
13:11736793..11778016
Genome browser
AA seq
1712 aa
AA seq
DB search
MAAAKEAPWRRLTGLSFGMYTEEEIRNLSVKSITNPLFLDNAGTPSPNGLYDLSLGPTDN
KEVCATCTQDFNNCPGHLGHIELPLTVYNPLFFDKLFLLIRGSCLSCGHLTCPRAVIHLL
LNQLKLLEVGLLQAAHDLEAVLSKFLDDNADAPGADVEEVLSLHTKELLQNNQFREHGAH
VKNVCEYRSKLISQFWKSHMGSKRCPNCKAGRSLVRKEHNSKLTVTYPTTVIKSGKQVVV
EEAATIDETQLGKRGYMTPAIAKKHVEALWKNEGFFLCKLLSGMTAIGDSSFNPDMFFLD
KIVVPPSRYRPVNRIADQMFANGQTVNLQAVMKDALLTRKLLAFIAQEQCQSMQIEEGDL
KTINTDKQPVELLDRSVLVTIPGQTTADKLYNIWIRLQSHVNIVFDSDMDKLMSEKYPGV
RQFLEKKDGLFRKHMMGKRVDYAARSVICPDMYIRTNEIGIPMVFATKLTYPQPVTPWNV
QELRQAVINGPNEHPGASMVINEDGSRTILSTASQTQREAIAKQLLTPSTGAPKPGIKIV
CRHIKNGDVLLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHF
PQNELGRAEAYVLACTDEQYLVPKDGQPLAGLIQDHMISGTSMTTRGCFFTREQYVELVY
QGLVDKKGMVKLLPPAIIKPQHLWTGKQVVSTLLINVIPEDHIPLNLLGKAKIDGKAWVT
GSASRIHGSGLAFMCESQVVIRNGELLCGVLDKAHYGSSAYGLVHCCHEVYGGETGGKVL
TALARLFTAYLQFYRGFTMGVEDILVKHRADHKRRRIIKESTRCGTKAVQAAFNLPQTSL
DEEVRGKWQDAHLHKDQRDFNMVDLKFKEEVNHYSNEINKVCMPLGLHRRFPENNLQLMV
QSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYDFPPRSGGFVAGRFLTG
IKPPEYFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLIVHYDLTVRDSDGSLVQFL
YGEDGLDIPKTQFLHSKQFPFITDNHKVIEKSKHLDEVLPKMDPQQANSQFRSIKRWQSK
HQQSLRREGGFLLFSQEMLASVKAQIPAGELVNGRDPATLQLLKMWYELSEKKRRKYQKK
AAKCPDPSLAVWRPDIHFASVSETFEREVENFLREWDAQNNTSYSKSELSSQRLKDLLHL
KWQQSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVATAN
IKTPMMSVPVLNTNKAHKKVKRLKKQLTRVCLGEVLQKFDIEESLCLEGMVSKHRIYTIK
FTFLPYECYQEEKCVKPRDILHFMESRFFKILLETIKRKSSKLASYNTVSTRRAMQRDLE
GDGEDGVSQENQGDDEAAGEEGGGGGAPDAETGEGDDDATDAKRRAKQEEEVDYESDEDN
EVDDDDIPDEEETPGLDERSPEGTESQDEHYAPSSSQQIRNKRKNLDELAQQRINAVQES
SDSIESYAYDIKNELWCKVSLKLPLTKQYFDLASLVTTLANNTVVQETKGITRCLLNETS
NKKGEMVLTLQTEGINLPELFRYADIFDVNRLYCNDIHAMANTYGIEAALKVLEKEIKDV
FAAYGIVVDPRHLSLVSDYMCFEGVYKPLNRFGIQSNSSPLQQMTFETSYKFLKEATMQG
SHDELQSPSACLVVGKVVKGGTGLFDLKQPLK
NT seq
5139 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgaaggaggcgccgtggcggcggctgacgggcctgtcgttcgggatgtac
acggaggaggagatacggaatctgagtgtaaaatctataaccaacccactttttctggat
aatgcgggtactccatcaccaaatggactgtacgatttgtctttggggccaactgacaac
aaagaagtgtgtgctacttgcacacaggacttcaacaactgcccaggtcatctgggtcac
atagaactgcccctcactgtctacaatcctctcttttttgataaattattccttttgata
cgaggttcctgcttgagctgtggccacctgacgtgtccacgggctgtgattcatttactg
cttaaccagctgaagcttctggaagtggggttgcttcaagcagcccatgatcttgaggcc
gtcctaagcaagtttttagatgacaatgcagacgcaccaggtgcagatgtggaagaagtg
ctgagtttgcacacaaaggaattgctccaaaataaccaattcagagaacatggtgcacat
gtaaaaaatgtatgcgagtatagaagtaaacttatctcccagttttggaaatcacacatg
ggctcaaagagatgtccaaactgcaaagcgggaagatcacttgtccgaaaagagcacaat
agcaagctcactgtgacttaccctaccacggtaatcaagtcaggcaaacaggtggttgtg
gaggaagcagcaaccatagatgaaacccagctgggaaaacgtggctatatgacacctgct
attgccaaaaaacatgttgaagccttgtggaagaatgaaggttttttcctttgcaagctt
ctctctggcatgacagccattggcgattcaagtttcaatcctgatatgttcttcctcgat
aaaattgttgttccaccttccagatatcgtcccgtgaatcgcattgcagaccagatgttt
gcaaatggtcagaccgtgaacttgcaagctgtgatgaaggatgctcttctgactcggaaa
ctgctggctttcatagctcaggaacaatgtcagtcaatgcaaattgaagaaggagacctg
aagacgataaacacagataaacagcctgtggagctcctggaccgttctgtcttggtgacg
atcccagggcagactactgcagataagctttacaacatttggattcgtcttcagagccat
gtaaatattgtgttcgacagtgacatggataagttaatgtctgaaaagtaccctggtgta
cgtcagtttctggagaaaaaggatggcctgttccgcaagcatatgatgggaaagcgagtg
gattatgcagctcggtcagtcatttgccctgacatgtacattcggaccaatgaaattggc
attcctatggtgtttgctaccaagctgacttatcctcagcctgtaactccctggaatgtc
caagaattgaggcaggcggtcatcaatggtcccaatgagcacccaggtgcttccatggtt
atcaacgaagatgggtctcgcacgatactgagcacagccagtcagacccagagggaagcc
atagccaagcaacttctgactccttccacaggggcaccgaaaccagggataaaaattgtg
tgccgccatattaaaaacggagatgtccttttgctgaatcggcagcctacccttcacaga
ccctccatccaagctcatcgagccaggatcctgcccgaagagaaggtcctgaggcttcac
tatgccaactgcaaagcctacaacgctgattttgacggcgacgaaatgaacgcccacttc
cctcagaacgaactgggcagagctgaggcctacgtcctggcgtgtactgacgaacagtat
cttgtccccaaggatgggcagccgctggcaggtttgatccaagatcacatgatctctggt
accagtatgaccacacggggctgcttcttcactagagaacagtatgtggaacttgtgtat
caagggctggtagacaaaaaaggaatggtgaagcttctccctccggccattataaagccg
caacacttgtggacagggaagcaggttgtttctacattgttaataaatgtaattccagag
gatcacattccactgaacttgcttgggaaagccaagattgatgggaaagcctgggtgaca
ggctctgccagtagaattcatggatcgggtcttgcctttatgtgcgaatcgcaggttgtc
atcagaaatggagagctactctgtggggtgttggataaagctcattatggtagctctgcc
tatgggctagtccactgctgccatgaggtctacggtggtgagactggtggaaaggtgctc
acagctctggctcggctcttcactgcctacctgcagttctacagaggttttacaatggga
gttgaagatatcttggtcaaacaccgggcagaccacaagaggcgcaggatcattaaagaa
agcacccggtgtggtacaaaggctgttcaagctgcgtttaacttgcctcaaacctcattg
gatgaggaggtccgagggaagtggcaagacgcccatcttcacaaagaccagagagatttt
aacatggtcgatctgaaattcaaagaggaagtcaaccattacagcaatgagattaacaag
gtgtgcatgcctcttggacttcaccggcgtttcccagagaataacttgcagctgatggtg
cagtcaggagccaaaggttctactgtgaatactatgcagatttcttgcttgctgggccag
attgagttggaaggtcgaaggcctcccttgatgccatccggcaaatcgttgccatgtttc
caaccttatgactttccccccaggtcaggggggtttgtggctggcagattcctcactggc
attaaaccgcccgagtacttcttccattgtatggctggtagggagggtctagtggacaca
gctgtcaaaaccagtcggtctggataccttcaaaggtgtatcataaaacatttggaaggg
ctgatagttcactatgacctgactgtgcgagacagcgatggcagcctagtccagtttctc
tatggagaagatggcctagacatccccaagacacagttcttgcattcaaagcagttccct
ttcatcacggataaccacaaggtgatagagaaatcaaagcatttggatgaagtgttgccg
aaaatggacccccagcaagcaaacagccagttcagatccatcaagagatggcagagcaag
catcagcagtctttgaggagggaaggaggctttttgctgttttctcaggaaatgttggct
agtgtaaaagcacagatccctgcaggagaacttgtgaatgggcgagatcctgcaactctg
cagttgttaaagatgtggtatgaattgagcgagaagaagcggaggaagtatcaaaagaag
gcagcgaagtgtcctgatcctagccttgctgtctggcggccagacatccattttgcatcg
gtatcggaaacatttgaaagagaagttgagaatttcctcagagagtgggacgctcagaac
aacacaagctacagcaaatctgaactttcttctcagaggttaaaagaccttctgcatttg
aagtggcagcaatcgctctgtgacccaggagaagctgttggtctccttgctgctcagagt
attggagagccctccacgcagatgactctgaacacctttcactttgctggaagaggcgaa
atgaatgtcacactcggtatcccgaggttgcgggagatcctgatggtggctactgctaat
attaaaaccccgatgatgagtgttcctgtacttaataccaataaagctcacaagaaggtg
aagaggctgaagaagcagcttaccagagtatgcttaggcgaggttttgcaaaaatttgat
attgaggagtctttgtgtttggaggggatggtaagcaagcaccgtatctacaccatcaaa
tttactttcttaccatatgaatgctaccaggaagagaaatgtgtgaagcccagggacata
ttgcattttatggagtcgagattctttaaaattttacttgaaacaattaagaggaagagt
tctaagttggcatcttacaatactgtgagcactcgaagagcaatgcagagggacttagaa
ggtgatggggaagatggcgtatcccaagaaaaccagggtgacgatgaggctgcaggtgag
gaaggaggaggtggaggtgctcctgatgctgaaacaggtgaaggggatgatgatgctaca
gatgcaaaaagaagagcaaagcaggaggaggaggttgattatgagagtgatgaggacaac
gaggtggatgatgatgatattccggatgaggaagagacaccagggttagatgagaggagc
ccagagggaacggaatctcaggatgagcattatgcgccttcctctagtcaacaaattcga
aataagaggaagaacttggatgaattagcacagcagagaattaatgctgtgcaggagagc
agcgattccatagagagttatgcctacgacataaaaaatgaactgtggtgtaaggtctca
ctgaaacttcctttaacgaagcagtactttgaccttgcctcacttgtgacaactctggca
aacaacactgttgtccaggagacgaaagggatcacacggtgtctcttaaacgaaaccagc
aataagaaaggagagatggtgctcactttgcaaaccgaagggataaacctccctgagctt
ttccgatatgctgacatttttgatgtgaaccggctttattgcaatgatattcacgcgatg
gccaatacctatggcattgaggctgccttgaaagtccttgagaaagagattaaagatgtg
tttgctgcatatgggattgtggttgatcctcggcatctctctctggtgtcggactacatg
tgcttcgaaggcgtttacaagccactcaatcggtttgggatacagtccaattcgtccccc
ttgcagcaaatgacatttgagacgagctacaagtttctgaaggaagccacaatgcagggc
tcccacgatgaacttcagtctccttctgcttgcctcgtggtaggaaaagttgtcaaagga
ggaacaggcttgtttgatctgaaacagcctctaaaatag
DBGET
integrated database retrieval system
