Podarcis raffonei (Aeolian wall lizard): 128400077
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Entry
128400077 CDS
T09310
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03020
RNA polymerase
praf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
128400077 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
128400077 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
praf03021
]
128400077 (POLR2A)
03400 DNA repair and recombination proteins [BR:
praf03400
]
128400077 (POLR2A)
Enzymes [BR:
praf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128400077 (POLR2A)
Transcription machinery [BR:
praf03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
128400077 (POLR2A)
DNA repair and recombination proteins [BR:
praf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
128400077 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
128400077
NCBI-ProteinID:
XP_053218036
LinkDB
All DBs
Position
13:complement(51784431..51820078)
Genome browser
AA seq
1969 aa
AA seq
DB search
MHGGAPSGDSACPLRTIKRVQFGILSPDEMKRMSVTEGGIKYPETTEGGRPKLGGLMDPR
QGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLGKTMKVLRCVCFFCSKLLVDS
NNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQAEGDEDITKEKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFILGMDPK
FARPEWMICTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIR
DNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWST
FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
CIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMG
HDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM
GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV
EFQNLATLKPSNKAFEKKFKFDYTNERALRRTLQEEMVKDILSNAHIQNELEREFEKMKA
DREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINTRLPSDLHPIKVVDGVKELSKKLV
IVNGDDPLSKQAQENATLLFNIHLRSTLCSRRMIEEFRLSGEAFDWLLGEIESKFNQAIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTV
FLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPD
FDVTRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLME
AAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGVGGPTGM
FFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGY
SPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGAYTPQSPSYSPTSPS
YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTS
PSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYS
PTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSP
KYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEDN
NT seq
5910 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggagcgccgtccggggacagcgcgtgcccgctgcgcaccatcaagcgcgtg
caattcggcatcctgagcccggatgagatgaaacggatgtcggtgacggaaggggggatc
aagtaccctgagacaacagaagggggccgccccaagctggggggcctgatggacccccga
cagggtgtcattgaaaggacaggacggtgccagacctgtgcaggcaacatgacagaatgc
cccggccatttcggacacattgagctggccaagcctgtcttccacgtcggcttcttgggc
aagacgatgaaggttctccgttgcgtctgctttttctgctccaagcttctggttgactct
aacaacccgaagatcaaagacatcctggccaaatccaaagggcagccgaagaagcgtttg
acccacgtctacgacctttgcaaaggcaagaacatctgcgaaggtggggaggagatggac
aacaagtttggagtggagcaggccgaaggcgacgaggacatcacgaaggaaaagggtcac
ggcggctgcgggcgctaccagccgaggatccggcgctcgggcctggagctctacgctgag
tggaagcacgtgaacgaggactctcaggagaagaagatcctgctgagcccggagcgggtg
cacgagatcttcaagcgcatctcggacgaggagtgcttcatcctgggcatggaccccaag
ttcgccaggcccgagtggatgatctgcacggtgctcccggtcccgccactgtctgtccgc
cccgctgtcgtcatgcagggctctgccaggaatcaggacgacttgactcacaagctggct
gacattgtgaagatcaacaaccagttgcggaggaacgagcagaacggagcggctgcccac
gtcatcgccgaagacgtcaagctgctgcagttccacgtggccaccatggtggacaacgag
ctgcctgggctgccccgcgccatgcagaaatcggggaggcctctgaagtccctgaagcag
aggctgaaggggaaagaggggcgcgtgcgagggaacctgatgggcaagcgagtggacttc
tcggcccggacggtcatcaccccggaccccaacctctccatcgaccaggtgggcgtgccc
cgatccattgcggccaacatgaccttcgccgagatagtgacgcccttcaacatcgacagg
ctgcaggagctggtgcgcagagggaacagccagtaccccggagccaagtacattatccgg
gacaacggcgacaggattgacctccgcttccacccaaagcccagcgacctccacctgcag
atagggtacaaggtagaacggcacatgtgcgacggcgacatcgtcattttcaatcgacag
ccaacgctgcacaagatgtccatgatggggcacagagtgcgcatcctgccgtggtccacc
tttcgcctcaatctcagtgtgaccaccccgtacaatgccgactttgacggcgacgagatg
aacctgcaccttccccagtccctggagacgcgggcagagatccaagagctggccatggtg
ccccgtatgattgtcacgcctcagtccaacaggcccgtcatgggcatcgtgcaggacacc
ctcacggccgtccgcaagttcaccaagagagacgtcttcctagagaggggcgaagtgatg
aacctgctgatgttcctctccacctgggacggcaaagtgccccagccggccatcctcaag
cctcgcccgctctggaccgggaagcagatcttctccctcatcatcccaggacacattaac
tgcatccgtacgcacagcacccatccggacgatgaggacagcgggccctacaagcacatc
tctcccggagacaccaaggtcatcgtggagaacggggagctgatcatgggcatcctctgc
aagaagtcgctgggcacctctgccggctccctggtccacatctcctacctggagatgggc
cacgatgtcacccgcctcttttacagcaacatccagacggttatcaacaactggctgctg
attgaaggccacaccattgggatcggagactccatcgctgatgccaagacctaccaagac
attcagaacaccatcaagaaggccaagcaggatgtcatagaggtgatcgagaaggcccac
aacaacgaactggagcccacccctggcaacacgctgaggcagacctttgagaaccaggtg
aacaggatcctgaacgacgcccgagacaagaccggctcatccgcccagaagtccctctcc
gagtacaacaacttcaagtccatggtggtctctggagccaaaggctccaagattaacatc
tcgcaggtcatcgccgtggtggggcagcagaacgtggaagggaagcgcatcccctttggt
ttcaagcaccggacgctgccccactttatcaaggacgactacggccccgagagcaggggc
ttcgtggagaattcctacctggccggtctcaccccgacagagttcttcttccacgccatg
ggaggccgagaggggctgatcgacacggctgtcaaaacagctgaaacaggttacatccag
cggcggctgatcaagtccatggagtctgtgatggtgaagtacgacgccacggtccgcaat
tccatcaaccaggtggtgcagcttcgctacggcgaggacgggctggcgggggagagtgtg
gagttccagaacttggccacgctcaagccttccaacaaggcctttgagaagaagttcaaa
ttcgactacaccaacgagcgggctctgcggcgcaccctgcaggaggagatggtgaaggac
attctcagcaacgcccacatccagaatgagctggagagggagttcgagaagatgaaggcc
gaccgggaggtgctgagggtgatcttccctacgggagacagcaaggtggttctcccatgc
aacttgctgcgcatgatttggaacgcgcagaagatcttccacatcaacacacgcctgccg
tccgacctgcatcctatcaaggtggtggatggcgtcaaggagctcagcaagaaactggtg
attgtgaacggggatgaccccctcagcaagcaggcgcaggagaacgccacgctcctcttc
aacatccacctgcgctccacgctgtgcagccggcgcatgattgaggagttccgcctcagc
ggggaagccttcgactggctgctgggcgagatcgagtccaaattcaaccaggccattgct
caccctggcgagatggtgggggcgctggctgcccagtccctgggcgagccggccactcag
atgaccctgaacaccttccactacgccggtgtctcggccaagaacgtgaccctgggcgtg
ccccgactcaaggagctgatcaacatctccaagaagcccaagaccccctcgctgaccgtc
ttcctgctggggcagtccgcccgagacgccgagagggccaaggacatcctttgccgcctg
gagcacacgaccctccgcaaggtgactgccaacaccgccatctactacgaccccaacccg
cagaacacggtggtggccgaggaccaggagtgggtgaacgtctactacgagatgcccgac
tttgacgtcacccgcatctccccctggctgctgcgcgtggagctggaccgcaagcacatg
accgaccgcaagctcaccatggaacagatcgccgagaaaatcaatgctggctttggggac
gacctcaactgcattttcaacgatgacaacgcagagaagctggtgctgcggatccggatc
atgaacagcgacgaaaacaagatgcaagaggaggaggaagttgtggacaagatggacgac
gacgtcttcctccgctgcattgagtccaacatgctgacggacatgacgcttcagggcatc
gagcagatcagtaaggtctacatgcatctgccccaaacggacaacaagaagaagatcata
atcacggaggacggggagttcaaggccttgcaggagtggattctggagacggacggcgtc
agcctcatgcgggtgctgagcgagaaggacgtggaccccgtgcgcacgacctccaacgac
attgtggagatcttcacggtgctgggcattgaggccgtcaggaaagccctggagagggag
ctgtaccacgtcatctccttcgacggctcctacgtcaactaccgccacttggcgctgctc
tgcgacaccatgacctgccgcggccacttgatggccatcacccggcacggcgtcaaccgc
caggacacggggcccctcatgaagtgctccttcgaagagacggtcgacgtgctgatggaa
gcggctgcccatggcgaaagcgaccccatgaagggcgtctcggagaacatcatgctgggc
cagctggccccggcgggcaccggctgcttcgacctcctcttggacgccgagaagtgcaaa
tacggcatggagatcccgaccaacatcccgggactgggcgtgggcggacctaccggcatg
ttctttgggtctgctcccagccctatggggggaatgtcgcccgccatgaccccctggaac
caaggcgcaacaccagcctatggggcatggtctcctagcgttggtagcggaatgactccg
ggggcagccggcttttcacccagcgccgcctccgacgccagcggcttcagccccggctat
tctccagcctggtcgcccaccccagggtccccggggtctccaggaccctccagcccgtac
atcccatcgccaggtggcgctatgtctcccagctactccccgacctctcctgcctacgag
cctcgttccccaggagcgtacacaccacagagccccagctacagccccacgtcgccttcc
tacagcccaacctctccgtcgtactcccccaccagccccaattacagccccacatcgccc
agctacagccccacgtcccccagttactctccgaccagccccagctacagccccacatcg
cccagttactccccgaccagccccagctacagccctacgtcgcctagctattctccaacc
agccccagctacagccctacgtcgcccagttactccccgaccagccccagctacagcccc
acgtcccctagctattctccgaccagccccagctacagccccacgtcccccagttactct
ccgaccagccccagctacagccccacatcgcccagctacagccccacatcgcccagttac
tctccgaccagccccaactacagccccacgtctccgaactacaccccgacttcgcccagc
tacagccccacctcgcccagctacagcccgacgtcgccgaactacaccccgacgtctcca
aactacagccccacctcgcccagctactccccgaccagcccctcctacagccccacctca
cccagctactccccctccagcccccgctacaccccgcagtcgcccacatacaccccctcg
tcgcccagctacagccccagctcgcccagctacagccccaccagccccaagtacaccccg
accagcccctcctacagccccagctccccagagtacaccccaacgtcgcccaagtacagc
ccgacgtcgcccaagtacagcccgacgtcacccaaatacagcccgacgtcgcccacctac
agccccaccacccccaagtacagcccgaccagccccacctactcgcccacctcgcccgtc
tacaccccgacctcccccaagtacagcccgaccagccccacctactcgcccacctccccg
aagtacagccccacctcgcccacctactcgcccacctctccgaagggctccacctactcg
cccacctcccccggctacagccccacgtcgcccacctacagcctcaccagcccggccatc
agcccggacgacagcgacgaggacaactga
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integrated database retrieval system
