Podarcis raffonei (Aeolian wall lizard): 128400115
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Entry
128400115 CDS
T09310
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM56-like
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
praf04121
]
128400115
Enzymes [BR:
praf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128400115
Ubiquitin system [BR:
praf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
128400115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4
zf-B_box
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_2
zf-RING_5
zf-RING_2
zf-C3HC4_4
RING_XB3-XBAT31
ANCHR-like_BBOX
Phytase-like
Motif
Other DBs
NCBI-GeneID:
128400115
NCBI-ProteinID:
XP_053218107
LinkDB
All DBs
Position
13:complement(55430610..55434137)
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AA seq
677 aa
AA seq
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MAAKAPSLSEALTSGFLTCTICLERLRRPKILPCLHSYCQECLRKLAGGRKELQCPECRE
RVALPEGGVGALRTNFFINGLLDLVRPTGEAEPTCSLCPLIGQETSWPAVSRCLDCADDM
CQDCASGHRCSRLTHLHRVVAMKDYLSGEHDEEIRKRQALQCKEHTGEELRFFCTPCAVV
LCRECRLGAHLQHPCLPLAEAAQARRPVIVELLAGVEETVQVIRTGRASLEREAAQLQVR
EASIRDAVEQACSRAVQRLLAQQEEVLAQLADYVKERQKACQALCSDLEFQEQVASSTVA
FAQKVLSLGREVEIVSLEQVICERLRHLQGFSWEPLATRLPCLEVDAEIEGSGPRLFHLE
FREESPTGVPEGPQEAATKGAKKKRRKQQQQVPPAKEGSQMTVPPPKVPEAPLLTPKPLF
SCSFWVKTPSDKKRPQVTGLCPFGSGELLVADEQNQKLKRFSLQGEFKGTVPVPSGVAPV
SVAVVGSKVAFTAGSCLYLLNGEGGLVWQKALRRGQASHAVVGLGGDRMAVCVAGQLEVY
DLEGRLLEKIVPEGSGERCLVFLANHKDGFVGSDWYRRSVVLFTRTGQLVAECSEEQLGE
CQPGAVCADATGIIYVVLRELNKVVAFSPSGEDLGAFLTAENSIDRPRVVTVAREGRFAV
ALSNGTVHIFRIRYQGK
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaaggccccgtccctctccgaagccctcaccagcggcttcctgacctgcacc
atctgcctggagcgcctccgccgccccaagatccttccctgcctgcacagctactgccag
gagtgcctgcggaaattggcagggggccggaaggagcttcagtgccctgagtgccgtgag
cgggtggccctcccagaggggggcgtgggcgccctccggaccaacttcttcatcaacggc
ctgctggacctggtccgccccacaggggaagcagagcccacctgcagcctctgtccgctc
atcggccaggagaccagctggccggccgtctcccgctgcctggactgcgccgacgacatg
tgccaggactgcgccagcgggcaccgctgctcccgcctcacccacctccaccgcgtggtg
gccatgaaggactacctctccggagagcacgacgaggagatccggaagcgccaggcgctg
cagtgcaaggagcacaccggcgaggagctgcgcttcttctgcacgccttgtgccgtcgtc
ctctgccgggagtgccggctgggggcccacctccagcacccttgtctgcccctggctgag
gcggcccaggcccgccggccggtcatcgtggagctcctggccggggtggaggagacggtg
caggtcatccggacggggagggccagcctggagagggaggctgcgcagctgcaggtgcgc
gaggctagcatccgggatgcggtggagcaggcgtgctcgcgggcggtgcagcggctgctg
gcgcagcaggaggaggtcctggcccagctggcggactacgtgaaggagcggcagaaggcc
tgccaggccctctgctctgatctggagttccaagagcaggtggcctccagcaccgtggcc
tttgcccagaaggtgctgagtctggggagggaggtggagatcgtctccctggagcaggtc
atctgtgagcgtctcaggcatctgcagggcttctcctgggagccgctggccacccgcctg
ccctgcctggaggttgacgctgagatcgagggcagcggcccccgcctgttccacctggag
ttccgggaggagagccccactggagtgccagagggcccccaggaggcggccacaaaaggg
gcaaagaaaaagaggaggaagcagcagcagcaagtgccgcctgccaaggagggatcccag
atgactgtgcctcctcccaaggtcccggaagccccccttctgacacccaagcctctcttc
tcgtgtagcttctgggtcaagacccccagcgacaagaagcgtcctcaggtcacagggctc
tgcccctttggctctggagagctgctggtggccgatgagcaaaaccagaagctgaagcgc
ttctccctgcagggggagttcaagggcactgtccccgtccccagtggcgtggccccagtc
agcgtggccgttgtgggcagcaaggtggccttcacagccggctcctgcctctacctcctg
aacggtgaaggtggcctggtgtggcagaaggccctgcgaagggggcaggccagccatgcc
gtggtgggtctggggggagaccgtatggcagtgtgtgtggctgggcagttggaggtgtac
gacctggaggggcggctgctggagaagattgtgcccgagggcagtggggagaggtgcctt
gtcttcctggccaaccacaaggacggctttgtgggctcggactggtaccgccgcagcgtg
gtcctgttcaccaggacggggcagctggtggccgagtgctctgaggagcagctgggcgag
tgccagccaggagctgtttgtgccgatgccacgggcatcatctacgtggtcttgagggag
ctgaacaaggtggtggccttctcccccagcggggaggatttgggggcgttcctcactgcc
gagaacagcatcgaccggccgcgggtggtcacagtggctagggaggggcgctttgccgtg
gctctgagcaacggcaccgtccacatcttccggatcaggtatcagggcaagtga
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