KEGG   Podarcis raffonei (Aeolian wall lizard): 128400889
Entry
128400889         CDS       T09310                                 
Symbol
THOC6
Name
(RefSeq) THO complex subunit 6 homolog
  KO
K13175  THO complex subunit 6
Organism
praf  Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:praf00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    128400889 (THOC6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:praf03019]
    128400889 (THOC6)
   03041 Spliceosome [BR:praf03041]
    128400889 (THOC6)
Messenger RNA biogenesis [BR:praf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     128400889 (THOC6)
Spliceosome [BR:praf03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    128400889 (THOC6)
SSDB
Motif
Pfam: WD40_WDHD1_1st WD40 WD40_Prp19 WDR55 WD40_CDC20-Fz Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_EML Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd NBCH_WD40 Beta-prop_WDR75_1st WD40_RFWD3 Beta-prop_IP5PC_F Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_IFT140_1st WDR54 WD40_MABP1-WDR62_1st Beta-prop_CAF1B_HIR1 Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_DCAF12 Beta-prop_EIPR1 WD40_like GCK
Other DBs
NCBI-GeneID: 128400889
NCBI-ProteinID: XP_053219546
LinkDB
Position
13:complement(39899009..39909209)
AA seq 327 aa
MDVQRSLELLHMTVYSQSVSPCGKYLAAGNNYGEIAIFSLSAALSSEAKEESKKPVVSFV
AHEGPVYALVSTDRQLLSAGNGEVKAWNWSEIVKKGCKEAWSRRPPYGSSLEVPEINSLQ
LNLKDNSLLMAGGDCSIHMMDLESGAFTHEYQGHTDYIHCLALRDQLRECLSGSEDGTVR
LWDLRTGGQVQSIEVHKYEECNRPQNGKWIRCLATESDWMVCGGGPALTLWHLRSVTPTT
IFPVPQCQQQVMFYQDLILSAGHSPTINHLQISGEVKAQIPCIPRCIHSLSINEHSPEHK
VLTAAGSSHRIDVFTNFGYRAFSLTFS
NT seq 984 nt   +upstreamnt  +downstreamnt
atggatgttcagcgatccctggaactcttgcacatgactgtctactcccagagtgtctca
ccatgtggcaagtacttggcagctgggaacaactatggagagattgccatcttcagcctt
tctgcagcactgagttcagaggctaaggaggagagcaagaagccagtggtgtcctttgta
gctcacgaaggtcccgtctatgccctggtttccacagaccggcagctgctcagtgctggc
aatggggaagtcaaggcctggaactggagtgagattgtgaagaagggttgcaaagaagcc
tggagcaggaggccgccttatgggagcagcttggaggtgccagaaatcaacagccttcag
ctgaacctcaaggataatagtcttctaatggctgggggagactgttccattcacatgatg
gatctggaatctggcgccttcacgcatgaatatcaaggccacaccgattatatccactgc
ctggcccttcgagaccagctcagagagtgcctgtcagggagtgaggatggcaccgtgcgc
ctttgggatttacgtactggaggtcaggttcaatcaattgaagtacataaatatgaggaa
tgcaacaggccgcagaacgggaagtggatccgttgcctggcaaccgagtccgactggatg
gtgtgtggtggaggcccagcgctcactctgtggcacctgcggtccgtcacacctaccacg
atattccccgtgccccagtgtcagcagcaagtcatgttctaccaggacttgattctctcg
gctggccacagccccaccattaaccatttacagatcagtggggaagtgaaggctcaaatc
ccttgcatcccacgttgcatccactctctttccatcaacgaacactcgccagagcacaag
gtgctgacagctgccggaagcagccatcgcatcgacgtcttcaccaactttggttaccgg
gccttttccctcaccttctcttaa

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