Podarcis raffonei (Aeolian wall lizard): 128400964
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Entry
128400964 CDS
T09310
Symbol
DHX8
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128400964 (DHX8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
praf03041
]
128400964 (DHX8)
Enzymes [BR:
praf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128400964 (DHX8)
Spliceosome [BR:
praf03041
]
Complex C
Other components
Step II factors
128400964 (DHX8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
Flavi_DEAD
AAA_16
T2SSE
PhoH
ABC_tran
TsaE
Cas3-like_C_2
Sigma54_activ_2
OB_RRP5_4th
Presenilin
Motif
Other DBs
NCBI-GeneID:
128400964
NCBI-ProteinID:
XP_053219701
LinkDB
All DBs
Position
13:complement(12513143..12547486)
Genome browser
AA seq
1184 aa
AA seq
DB search
MAEPVDELAKLEYLSLVSKVCTELDNHLGINDKDLAEFVINLAERNTTFDAFKAALVKNG
AEFTDSLISNLLRLIQTMRPPAKPSTSKEAVKPKTEKEKYKELFPALCRPDNPIVRTMLD
EDDVKVAADALKELEALMPTAGSQEKHRSSEDHSKRRRRSRSRGRDQKRKRKSPSRSRTR
ERNKGKSRYRSRSRSPSWDRKEREKPAEKSNERWRDKHVDRPPPEEPSIGDIYNGKVTSI
MQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGSKTSLSM
KDVDQDTGEDLNPNRRRNLVGESEEAAMRNPDRPTHLSLVSAPEVEDDTLERKRLTRISD
PEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQS
MDMSPIKIVKNPDGSLSQAAMMQSALAKERRELKQAQREAEMDSIPMGLNKHWVDPLPDV
DGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQLSIIEQRESLPIYRLKDQLIQ
AVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGC
CLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDV
LFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILYTKEPETDY
LDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSAL
PSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVV
TPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMG
INDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMS
VHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNK
FSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKATVRVQKAICSGFFRNAA
KKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEF
APAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcctgtggacgagctcgctaagctcgagtacctgtccctggtctccaaagtc
tgcacggagctcgacaaccacttgggcatcaacgacaaggatctggctgaatttgtgata
aacctcgcagagagaaatacaacctttgatgcattcaaggcagccttggtgaagaatggt
gccgaatttacagattccctcattagcaacctgctgcgtcttatacagacgatgcgacca
cctgcaaaaccttccactagcaaagaggctgtaaaaccgaaaaccgaaaaggaaaagtac
aaggagttgtttccagccctctgtagaccagacaatcccattgtcaggacaatgttggat
gaagatgatgtgaaggtcgctgccgatgccctcaaggaactggaagctttgatgccaact
gcaggcagccaggagaagcaccgaagcagtgaggaccacagcaagagaaggcggaggagc
cgcagcaggggccgggaccagaagcggaagcggaagtcgccctctcgttcccggacgagg
gagcggaataagggaaagtccaggtaccgttccaggagcagaagccccagctgggaccgg
aaggagcgggagaagcctgcagagaagagcaacgagcgatggcgggataagcacgtggac
cggcccccaccagaggagccatccatcggggacatctacaacggcaaagtcaccagcatc
atgcagtttggctgctttgtccagcttgaaggactcaggaagcgctgggaaggacttgtc
cacatctcagagctgcgccgcgaggggcgtgttgctaatgtggccgacgtggtgagcaaa
gggcagagggtcaaagtcaaagttctgtccttcactggctctaaaaccagcctcagcatg
aaggatgtagatcaagacacgggggaggatttgaacccaaacagacgtcggaacctcgtc
ggggagtctgaggaggcagccatgagaaacccagaccggccaacccacctgtccttggtc
agtgctccagaggtagaggacgatacgttggaacggaagcgcctcacccgcatttctgac
cctgagaaatgggaaatcaagcagatgattgctgccaacgtgctttccaaggaggagttc
cctgacttcgacgaggaaacggggatcctgccaaaggttgacgatgaagaagacgaggac
ctggaaatcgaactggtcgaggaggagccgccgttcctgcgagggcacaccaagcagagc
atggacatgagccccatcaagattgtgaagaaccctgacggctccctgtctcaggctgcc
atgatgcagagtgcgctggcaaaagagaggcgagagctgaagcaagcacagagggaggca
gagatggactccatccccatgggactcaacaaacactgggtggatcccctcccagacgtg
gatgggagacaaatcgctgccaacatgcgagggattggcatgatgccaaacgacatccca
gagtggaagaaacacgctttcggaggcaataaagcctcttatgggaaaaaaactcagctg
tcgatcattgagcagagggaaagtctcccgatttaccggctgaaggatcagctcatccag
gctgttcacgataaccagattctgatagtcatcggagagacgggctccgggaaaacgaca
cagatcacgcagtaccttgctgaggctggctacacctcccgcgggaagattggctgcacc
cagcctcgtcgagtggctgccatgtccgtggccaagcgggtatcggaggagttcggctgc
tgcctgggacaggaggttggctacaccatccggtttgaggactgtaccagtccagagacg
gtgatcaagtatatgacagacgggatgttgctgcgagagtgcctgatcgacccggatctg
acgcagtatgccatcatcatgttggatgaagcccacgagcgcaccatacacaccgatgtg
ctgtttggtctcctgaaaaagacggttcagaagaggcaagacatgaagttgatagtgacg
tcggccaccttggacgcggtcaagttctcccagtacttctacgaggctcccatctttacc
atcccaggcaggacgtacccagtggagattctctatactaaggagccagagacagattac
ctggatgccagcctgatcacagtcatgcagatccacttgacagagccaccaggagacatc
ctggtgtttttgactggccaggaggagatcgacacggcttgcgagatcctctatgagcga
atgaaatccctgggtcctgatgtccctgagctgatcatcttgcccgtttactcggcgctg
cctagcgagatgcagacacgcatctttgacccagctcccccagggagtcgaaaggtggtc
attgccacgaacatcgctgaaacttcgctcacaattgacggcatctattacgtggtggac
cctgggtttgtgaagcagaaagtatacaactcaaagacaggaattgaccagctggttgtg
acacctatttctcaggcccaagccaagcagcgagctgggagggctgggagaaccgggcca
ggcaagtgctaccggctgtacacagagcgggcctaccgcgacgagatgctcaccaccaac
gtgcctgagatccagaggaccaacttggccagcactgtgctgtcccttaaggctatggga
atcaacgacctgctctcctttgatttcatggatgctccgccaatggaaactctgatcacc
gcaatggagcagctgtacactctgggtgccctggatgacgaggggctgctcacccgactg
ggacgccggatggccgagttccccctggagcccatgttgtgcaagatgctcatcatgtcg
gtgcatctgggatgcagcgaggaaatgctcaccatcgtctccatgttgtcggtgcagaac
gtcttctaccgacccaaggacaaacaagctctcgctgaccagaagaaagccaagtttcac
cagacggaaggggaccacctcacgcttctggccgtgtacaactcctggaagaacaacaag
ttctccaatccctggtgctatgagaacttcatccaagcccgatcgctgcgccgtgcccag
gatattcgcaaacagatgttgggcatcatggataggcacaagctggacgtagtgtcatgt
ggaaaagccaccgtacgcgtccagaaagccatttgcagcggtttcttccggaatgcggcc
aagaaggatccccaagagggctaccggaccttgattgaccagcaggtcgtctacatccac
ccctcaagtgccctcttcaaccgccagcctgaatgggttgtatatcatgagctggtgctc
accactaaagagtatatgcgggaggtcaccaccatcgatccccgctggctggtggagttc
gcccctgccttcttcaaggtctctgaccccacaaaactcagcaagcagaagaaacagcag
cgcctggagcccctttacaaccgctacgaagagcccaacgcctggagaatatcgcgagcc
ttcaggcgccggtga
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integrated database retrieval system
