Podarcis raffonei (Aeolian wall lizard): 128401036
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Entry
128401036 CDS
T09310
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03030
DNA replication
praf03410
Base excision repair
praf03420
Nucleotide excision repair
praf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128401036 (LIG1)
03410 Base excision repair
128401036 (LIG1)
03420 Nucleotide excision repair
128401036 (LIG1)
03430 Mismatch repair
128401036 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
praf03032
]
128401036 (LIG1)
03400 DNA repair and recombination proteins [BR:
praf03400
]
128401036 (LIG1)
Enzymes [BR:
praf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
128401036 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
128401036 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
128401036 (LIG1)
DNA replication proteins [BR:
praf03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
128401036 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
128401036 (LIG1)
DNA repair and recombination proteins [BR:
praf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
128401036 (LIG1)
NER (nucleotide excision repair)
Other NER factors
128401036 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
128401036 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
128401036
NCBI-ProteinID:
XP_053219862
LinkDB
All DBs
Position
13:32659766..32682850
Genome browser
AA seq
972 aa
AA seq
DB search
MQICTMQSTIRSFFQPLAQTKPGKEAAEKKHLEEEPAPKRKPVDSEPQVNGTTHHANSPV
NTAAPKTTSIIKSEEDSGKPKQKDTEADNNKQVSDCVPEQKIPAQSTSQSTSPATSNSPS
PTYIPRRRTARKQLPKRKAEEEVSNHDSIQQEHCTKRWKGDNEDGEGTEGEPDEESNKTE
EMKYDNSEVVQVKIEQDAEEETTPAPPKPSNNPISNFFGTKGEPDEGSIKTEEMKDDNSE
VVQVKIEQDADEETTPAPPKLSSKPISNFFAPRKASMKTEKKEVPVIGGIMPAPKSLNGH
ESNSKADCSAKPSLTLEPTNYNPMKGNYHPINDACWGPGQRVPYLAVARTFEKIEEESAR
LKIIETLSNLFRSVIALSPEDLLPCVYLCLNRLGPAYEGLELGIGKTILMKALAQATGRN
LDQIKAEAAEKGDLGLVAESSRTTQGTMFAPPKLDAASVFGKLQAIGRMTGSSSMNKKID
IIKTLFVACRYSEARYVARSLEGKLRIGLAEQSVLSALAQAASLTPPGQKFPPGVLDASK
GKSAEVRKNWLDERALIVKQAFCELPNYDTIVPVLLEHGVESLPHHCKITPGIPLKPMLA
HPTRGIGEILKRFEEAAFTCEYKYDGERAQIHILENGEVHVYSRNQENNTTKYPDIVSRI
PKVKKSTVQSCILDAEAVAWDPDSKQIQPFQVLTTRKRKDVEATEIRVQVCVYAFDMLFL
NGQSLVRKPLSERRALLHDSFNEVEGQFLFATSMDTSNTDEIADFLECSIKDSCEGLMVK
TLEVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRAGVYGCFLLACYDD
DSEEFQSICKIGCGFTDYDLEEFHTSLKDYVIPQPRPYYRWGGTAEPDHWLEAQHVWEVR
CADLSISPVHKAAAGLVDEEKGISLRFPRFVRIRDDKKPEEATASTQVAELYRKQQQILN
QQSVEKGDDDFY
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatctgcacaatgcaaagcactataagatcattcttccagcccctggcacaaaca
aagcctggaaaagaagcagcagagaagaagcacctggaagaggagcctgcccccaaaagg
aaacctgtagattccgaaccacaggtaaatggtacaacacaccatgcaaattccccagtg
aatactgcagccccaaaaaccacctccattattaaaagtgaagaggattctgggaaacca
aaacaaaaggatacagaggcagataataacaagcaggtttctgactgtgttcctgagcaa
aagattcctgcgcagagcacctcacaaagcaccagcccagctacctctaattcgccctca
cccacctacattccccggcgcagaacagcacgcaagcagctccctaaacgtaaagcagag
gaagaagtcagtaaccatgatagcatccagcaggaacattgtaccaaaagatggaaagga
gataatgaggatggagagggcacagaaggggagccagatgaggagtccaacaagacagaa
gaaatgaaatatgataattcagaagtggtgcaggtaaaaattgagcaagatgcagaggaa
gagacaacaccagcaccccctaagccatccaacaaccccatctctaatttttttggcaca
aaaggggagccagatgaggggtccatcaagacagaagaaatgaaagatgataattcagaa
gtggtgcaggtaaaaattgagcaagatgcagatgaagagacaacaccagcaccccctaag
ctatccagcaagcccatctctaatttttttgcccctcggaaagcctctatgaagacagag
aaaaaagaagtgccggtgataggaggaatcatgcctgcaccaaagagccttaatggccat
gaatccaatagcaaagctgactgttctgccaagccatctcttacacttgagcctacaaat
tacaacccaatgaagggaaattatcatcctataaatgatgcttgttggggccctggccag
agggtaccatacctggcagtagctcgtacctttgagaagattgaggaggaatctgcccgg
ttgaaaattatagagaccctgagcaatcttttccgctctgtgattgctctgtctccagaa
gacttgctgccctgtgtctacctctgtctcaaccggttaggcccagcatatgagggccta
gagttgggcattggtaaaaccatcctcatgaaagctttggctcaggccacaggtcgtaat
ttggaccagatcaaggcagaagcagcagaaaagggagacctaggtttggttgctgagagt
agccgcactacacagggtaccatgtttgccccacccaagcttgatgctgcttctgtcttt
ggcaaacttcaggccattgggcgcatgacaggaagctcttcaatgaacaagaagattgac
attatcaagactttgtttgttgcttgtcgctattcagaggctcgctacgttgctcggtca
ctagaaggaaaactgaggattgggttagcagagcagtctgtcctgtctgctctggcccag
gcagcatcactcactcctccaggacaaaaatttcccccaggagttttggatgcttcaaag
ggcaagtctgcagaagtgcgcaaaaactggttggacgagagagcattgattgttaaacag
gccttctgtgagctgccaaattatgatactattgtgcctgtccttctggaacatggtgtg
gagagtctgcctcatcactgcaagatcacaccagggattccactgaagcccatgctggct
cacccaacaaggggaattggggagatactaaagcgatttgaagaggcagctttcacctgt
gaatacaaatacgatggggagcgagcacagatacacatcctggagaatggagaagtgcac
gtctatagccggaaccaagagaacaacacaacaaagtaccccgacattgtcagccgtatc
cccaaggtaaaaaagagcactgtgcaatcatgcattttggatgcagaagctgtggcctgg
gatcctgattccaaacagatccagccattccaggtactcaccacccgcaagcgcaaggat
gtagaggccacagagatccgagtgcaggtttgtgtgtatgcattcgacatgctcttcctt
aatggacagtctctagtccggaaacccctatctgagcgccgggctttgcttcatgattcc
ttcaatgaagttgaaggccagttcctgtttgcaacctccatggacactagtaacactgat
gagatagcagatttcctggaatgctccatcaaagattcatgcgaggggctaatggtgaaa
acactggaagtggatgccacatacgaaattgcaaagagatctcacaactggctgaagctt
aagaaagattatctggaaggtgttggcgacaccttggaccttgtggtgatcggtgcctat
ctgggcaagggcaaacgtgcaggcgtatatggttgtttcctcttggcttgctatgatgat
gatagcgaggagttccagagcatctgcaagatcggctgtggattcacagattacgaccta
gaagaattccacacctctctcaaggactatgtgattccacagccacgaccctactaccgc
tggggtggaacagctgagcctgaccactggctagaggctcagcatgtctgggaggtgagg
tgtgctgacttatccatttctccagtccacaaagcagcagctggtttggttgatgaagaa
aagggcatctccctccgctttcccagattcgtacgcatccgtgatgataagaaaccagag
gaagccactgccagtactcaggtggctgagttgtaccggaagcagcagcagattctgaat
cagcaatcagtggaaaaaggagatgatgatttctactaa
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