Podarcis raffonei (Aeolian wall lizard): 128401463
Help
Entry
128401463 CDS
T09310
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
praf01001
]
128401463 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
praf04054
]
128401463 (CIITA)
Enzymes [BR:
praf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
128401463 (CIITA)
Protein kinases [BR:
praf01001
]
Serine/threonine kinases: Other
TAF1 family
128401463 (CIITA)
Pattern recognition receptors [BR:
praf04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
128401463 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
LRR_14
LRR_9
nSTAND_NTPase5
DUF7885
NB-ARC
AAA_16
RsgA_GTPase
nSTAND3
Motif
Other DBs
NCBI-GeneID:
128401463
NCBI-ProteinID:
XP_053220539
LinkDB
All DBs
Position
14:complement(45037700..45080612)
Genome browser
AA seq
1049 aa
AA seq
DB search
MDPGVLAGKSYLDLLFSDVDIPVLYKEVVETEPDDQENNPDVFYTVESNESGEQVCLCAD
TGEAYDKIASLAEYVLKDQQEKPEEDLFGNLVLDEAAAETPGEAKKRGSCSDAPEPKRRK
LAHPPALCVVNGNCITIPLSCSPADTLSSPDFHMEFSVTTISPAFEPLASPNLYYCPLGM
EDIQVVFAFEPLNQCVNILAEPEGAIINACPDVVVADKGPEAPPVHSERAHKRLGPVDVF
RRRLKDHFREMCQFVPMEREFALDRLYIERDMALCLVESKNAGKNADPRPCDLREKGKAA
VRSSQLFQLPWKNNLGTKVVVVLGKAGMGKSLLVQKICLDWSRGHFPNYAFLFRFDCRML
GLLPENRYSLKQLLFELSAGPQDGGDNIYRHVLRYPEKVLLIFDGFEELKDRDGLTSGVD
SLPHKEPLGIGGILAGIFQKKVLSGCTVLLTSRPKDKLQQHLSKMDTTLELAGFSTQQAE
SYIAQYFEGSPCCGEAVALIRKCPYLFSHCYTPDLCRFVCEAVSEGGCKELPSTLTGLLA
KFLLQKLMRSSTQRSSPKHQNIAALAQVAWSSGQDHRNTLMSYNFPSTEVKEFALSCGLV
VPLAFPKDSSSGKEECGYVFPSFVVQNFLVALHLVLAKEIKDKTLTKYLRLLTKSKKFLF
SWSLVPCFLSGLLFLGGKLRSSVLFREEGEMDAKRMAGKKERSFSNYVRKLMERDFTPDK
LLDFLHCLYETGDRCLLKQMALELKCDLSFSGFALTPPNVYILHSVIKQAKRKFALDLRG
SAIDSEGFKQLVTMKNVASFRASLSDAVRLWRQLWEAEERDQLQSAIEKFIVVPFKAKTM
RDVDDLCALVDMQEKMTQSEADSAGGSARLIPAVTELKQLEFTLGRVCGLMGFRKLVRIL
GTFPALQHLDLDSPNENEIGDEGVTSLSSVLPRLSYLEMLNLSGNKITDLGAEKLAKALP
SLRSLKTLSLYNNNIGDAGAEHFARVLPETASLRVLDIHCNKITAAGAQHLTDSLRKCPR
VQSVALWNPTIPHGLLDHLQQLDSRIRLL
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggacccaggagtcctggctgggaagagctacctggacctcctgttcagtgacgtcgac
attccggttctgtataaggaggtagtggaaacagaacctgacgatcaggaaaacaacccc
gatgtcttttacacagtggaaagtaatgagagtggagaacaagtctgcctgtgtgcggac
actggagaggcctatgataaaatagcttccttggctgaatacgtgctgaaagaccagcaa
gaaaaacctgaggaagatctgttcggaaacctggttctagatgaggcagcggctgaaacc
ccaggggaggccaagaaacggggcagctgctctgatgctccagagcccaaacgcaggaaa
ctcgcgcatccaccggctctctgcgtcgtcaatggcaattgcatcaccatccctctgagc
tgctccccggccgacactctctcgtcgcccgacttccacatggagttttcagtgaccacc
atcagccctgccttcgagcctcttgcaagccccaacctgtactactgcccactcggcatg
gaagatatccaggtagtctttgccttcgagcctctcaatcagtgcgtgaatattcttgct
gagccagaaggtgccatcattaatgcctgtcctgatgtggttgtggctgacaaaggacct
gaagccccacctgttcattcagagcgagctcacaaacgactaggccctgtggacgtgttt
cgcaggaggctaaaagaccacttccgggagatgtgccaatttgtgcccatggagcgagag
ttcgccctggaccgcctttacatcgaacgcgacatggcgctgtgcctcgtggaaagcaag
aacgccgggaaaaatgccgaccccaggccctgcgacctcagagagaaagggaaggctgcg
gtgaggagcagccagctctttcagctgccgtggaagaacaacctgggaaccaaagtcgtc
gtcgtcttggggaaagccggaatggggaaaagcctgctggtccaaaagatctgtctggac
tggtccagaggacattttcccaattacgccttccttttccgctttgattgccggatgctg
ggcctcctccccgaaaaccgctacagcctgaagcagctgctgtttgagctctccgctggg
cctcaagatggcggtgacaacatctacaggcacgttctgcggtacccggaaaaggtcctc
ctcatttttgatggttttgaagagctgaaggaccgggatggcttaacatctggtgtagac
agcctgccccacaaggagcccttgggaattggaggcatcctggccggaatcttccagaag
aaggttctcagcggctgcacggtgcttctaacctcccgccccaaggacaagttgcagcag
catttatcgaagatggacacgacgctggaactggcagggttctccacacagcaagccgag
tcgtacattgctcagtacttcgaaggatcgccctgctgtggcgaggcggtggctttgatc
aggaaatgcccttacctcttcagccattgctacactcctgacctgtgtcgcttcgtttgc
gaggctgtgtctgaaggggggtgcaaggaactgccttccacgcttaccggcctgttggcc
aagttcctcctccaaaaactgatgcgttcgtcaacgcagagatcttcccccaagcaccag
aatatcgccgctttagctcaggtggcctggtcttccggacaggaccaccggaacacactc
atgagctacaactttccatccacggaagtgaaggagtttgctctcagctgcggactggtc
gtccccctcgcattcccaaaagactcgagcagtggcaaagaggaatgtggctacgtgttc
cctagcttcgtggtccaaaatttcctggttgccctacatttggtgctggctaaagagatc
aaggacaaaacgctcaccaaataccttcggctcctcaccaaatccaagaagtttctcttc
tcttggagcttggtaccttgttttttgtccggcttgctatttttagggggcaaactgagg
tcctctgtccttttcagagaggagggggagatggacgccaagagaatggccggcaagaag
gagagaagcttctcaaactacgtccggaaactcatggagcgtgatttcactccggacaag
ctccttgattttctccactgtctctacgaaacgggagatcgttgccttttgaagcaaatg
gctttagaactcaagtgtgacctctccttctcggggtttgcccttaccccacccaatgtc
tatattctccactctgtcatcaaacaagccaaaaggaaatttgctttagatttgagaggg
agcgccattgactcagaaggattcaaacagctggtcaccatgaagaatgttgcatcattc
agggcatccctcagcgatgccgtccggctctggaggcagttgtgggaagccgaggaaaga
gaccagctgcaatccgccattgagaagtttattgttgttccattcaaagccaagacgatg
agggacgttgacgacctctgtgctcttgtcgacatgcaggagaaaatgacccaaagcgag
gctgattcagctggtggtagcgcccgcctcatccctgccgtcacagagcttaaacaatta
gaattcacgttgggtcgtgtctgtggcttgatgggcttccgaaagctagtgaggatcctg
ggcacgtttcctgctctgcaacatttagacttggattctcccaacgagaacgagatcgga
gacgaaggagtgactagcctcagcagcgtccttcctcgcttgtcctacctggaaatgtta
aacctgtcggggaacaaaataacagacctgggggcagagaagttagccaaagcgcttcca
tcactgcgttcgctgaagacactaagcttatacaataacaacattggagatgcgggggca
gaacattttgccagagtgctcccagagacagcttctttgagagtgcttgacatccattgc
aacaagataacggctgctggagctcagcacctgacggacagcttgaggaaatgtccccgc
gtccagagtgtggcgctatggaaccccactattccccatggacttctagatcatctgcag
cagctggattctcgaatcagattactctag
DBGET
integrated database retrieval system
