Podarcis raffonei (Aeolian wall lizard): 128402107
Help
Entry
128402107 CDS
T09310
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128402107 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
praf03019
]
128402107 (PARN)
Enzymes [BR:
praf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
128402107 (PARN)
Messenger RNA biogenesis [BR:
praf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
128402107 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
RRM_1
NCBP3
DUF7722
Motif
Other DBs
NCBI-GeneID:
128402107
NCBI-ProteinID:
XP_053221949
LinkDB
All DBs
Position
14:44155027..44200841
Genome browser
AA seq
636 aa
AA seq
DB search
MEITRNNFKDNLSKVYEAIEDADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDLTESKYVIKTFNFYIFPKPFNRTSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDERRSQANGVGALSYVSPNASKCPVTIPEDQKKF
IEKVVERIEDLLQKEESTNLELEPCTGFQRKLIYQTLSWKFPKGIHVETQETEKKERYII
ISKVDEEERKRREQQKRVKEQEELKDAVGFSRVVHALANSGKLVVGHNMLLDVMHTIHQF
YCPLPEDLNEFKELATCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRVKETPFSPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSYLSPPKSHVSAKSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPEQVQIAVNTSKYAESYRIQTYAEYVEKKHEEKRQGKRKWTEDGWKEMEGKRL
KTQAAPYVLQNRYYNPNSFSATSTVGKRSMSPIQEESGCDDVEESEMQEDPPDSFAEPLE
EGKKKTKKFKKAKREHAPAEDLPAQPTQLFDVPDTW
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggagataaccaggaacaattttaaggacaatctcagcaaagtttatgaagctattgaa
gatgcagactttttggctatcgatggagagttttcaggaattagcgatggaccatctgtt
agcgcattaacgaatggattcgacacacctgaagaaaggtatcaaaaacttaaaaagcat
tccatggatttcttgctgttccagtttggcctttgcacttttaaatacgatctcacagaa
tctaagtacgttataaaaacgtttaatttctacatcttccccaaacctttcaatagaacg
tcgccagatgtgaagtttgtctgtcagagttcaagtatagactttttagcaaaccaggga
tttgattttaataaagtttttcgcaatggaatcccttatttaaatcaagaggaggaaagg
cagctacgggagcaatatgacgaaaggcgatcccaagccaacggagtgggggccttgtcg
tacgtgtcccccaatgcttcgaagtgccctgtgaccattccagaggaccagaagaagttc
attgagaaagtagtagaaaggatagaagacctcttgcagaaggaagagagcacaaatttg
gagctggaaccatgcacaggattccagaggaaactaatttatcagacgctgagctggaag
tttccgaaaggcatccatgtcgaaactcaggaaacggagaagaaggaaagatacattatc
attagcaaagtggatgaagaggagcgaaaaaggagagagcagcagaagcgagtgaaggag
caggaagaactcaaagacgcagtggggttttcccgagtcgttcacgctcttgcaaattcc
ggcaagcttgtggttggacacaacatgttgctggatgtcatgcataccatccaccagttt
tactgcccgctacctgaggatctcaatgagtttaaagaactggcgacatgtgtctttcca
aggttactggacactaagttgatggccagcactcagccgttcaaggaaatcattaacaac
acatcccttgcagagctggagaagcgtgtaaaggagactcccttcagccctccaaaagtc
gaaagcgcagagggattcccgagttacgacacagcttcagagcagcttcacgaagcaggt
tatgacgcttacatcacaggcctgtgcttcatctccatggccaacttcctaggttcctat
ctcagcccccccaaaagtcacgtgtctgccaaatcaaagctcatcgaaccttttttcaac
aaactgtttctgatgcgggtgatggacatcccatatcttaacttggaaggaccagacctg
cagccaaaacgcgaccacgttctttacgttacgtttcccaaagagtggaagacgagcgac
ctttaccagcttttcagtgcttttggcaacattcaggtttcctggatcgatgatacgtca
gcctttgtgtcgcttagccagcctgaacaagtacagattgccgtaaacaccagcaagtac
gccgaaagctacagaatccagacctacgcagaatacgtggagaagaagcacgaggagaag
aggcagggcaagaggaaatggacggaagatggttggaaggagatggagggaaagcggctg
aaaacacaggccgctccgtacgtgcttcaaaaccggtactacaacccgaacagtttttca
gctaccagcaccgtggggaagagaagcatgagccccattcaagaggagagtggctgtgac
gacgtggaagagagcgaaatgcaggaggatcccccagactcctttgcggagcccttggaa
gaggggaagaaaaaaaccaagaagttcaagaaagccaaaagggaacatgccccagcagaa
gacctcccggcccagcccacccaacttttcgacgttccagacacgtggtag
DBGET
integrated database retrieval system
