Podarcis raffonei (Aeolian wall lizard): 128402390
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Entry
128402390 CDS
T09310
Symbol
DDX6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128402390 (DDX6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
praf03019
]
128402390 (DDX6)
03036 Chromosome and associated proteins [BR:
praf03036
]
128402390 (DDX6)
Enzymes [BR:
praf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128402390 (DDX6)
Messenger RNA biogenesis [BR:
praf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
128402390 (DDX6)
mRNA degradation factors
5'-3' decay
Decapping complex
128402390 (DDX6)
Chromosome and associated proteins [BR:
praf03036
]
Eukaryotic type
Gene silencing
piRNA pathway
128402390 (DDX6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
128402390
NCBI-ProteinID:
XP_053222431
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All DBs
Position
15:29244483..29267185
Genome browser
AA seq
483 aa
AA seq
DB search
MSTARTENPVIMGLSSQNGQLRGPVKPTGGPGGGGTQAQQQMNQLKHPNTINNGTQQQAQ
SMASTIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV
QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVED
EKP
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagccagaacagagaaccctgttataatgggtctctccagtcaaaatggacag
ctgaggggccccgtaaaacccactggtggcccaggaggcgggggaacacaggctcagcaa
cagatgaaccagctgaaacatcccaacacaatcaataacggcactcagcagcaagcacag
agcatggcctccactatcaaacctggcgatgactggaagaagactttaaaactccctcca
aaagatctgagaattaaaacttcggatgtgacatccacaaaaggaaatgaatttgaagat
tactgcctgaaacgggagttgctgatgggaatttttgaaatgggctgggaaaaaccatct
ccgattcaggaggagagcattcccattgctttgtctgggagggatatcttggctagagct
aagaatggaaccggaaagagcggcgcctacctcattcccttacttgaacggcttgactta
aagaaggataacatacaagcaatggtgattgttcccacacgagaacttgccctgcaggtc
agtcagatctgcatccaggtcagcaaacatatgggaggggccaaagtgatggcaaccaca
ggaggaaccaacctgcgtgatgacataatgaggcttgatgatacagtgcatgtggtgata
gctacgccagggaggattctggatctcatcaagaaaggagtagcaaaggtggaccatgtc
cagatgattgttctagatgaggcagacaagctgctgtcccaagattttgttcaaataatg
gaggacattattctcacgctacctaaaaatagacagatcttgctatactcagccactttc
cctttaagtgtacagaagtttatgaattcccacttgcagaaaccttatgagattaacttg
atggaagagctgacactgaagggagttactcagtactatgcctacgtaactgagcgccag
aaagttcattgtctcaacacactattctccaggctccaaatcaaccaatcaatcatcttc
tgcaactcttcccaacgggttgaactactagctaagaaaatttcccagctggggtattcg
tgcttctatatccatgcaaagatgagacaggagcaccgcaatcgtgtgttccacgatttc
cggaatggcttatgccgcaatcttgtttgcactgatctgtttacccgaggtattgatatc
caagctgtgaatgttgtgataaactttgattttccaaagctggcagaaacgtatctccac
cgtattggcagatcaggtcgatttggccaccttgggctagccatcaacttgatcacctat
gatgatcggttcaacctgaagagtattgaggaacagctgggtacagaaatcaagcccatc
cccagtaacattgacaagagcctgtatgtggcagaataccacagtgagcctgtagaagat
gaaaaaccttaa
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