Podarcis raffonei (Aeolian wall lizard): 128402963
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Entry
128402963 CDS
T09310
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
128402963 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
praf03400
]
128402963 (LIG3)
Enzymes [BR:
praf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
128402963 (LIG3)
DNA repair and recombination proteins [BR:
praf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
128402963 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
RasGAP_C
Motif
Other DBs
NCBI-GeneID:
128402963
NCBI-ProteinID:
XP_053223428
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All DBs
Position
15:complement(14053577..14080685)
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AA seq
995 aa
AA seq
DB search
MPSLLRVHLLKAARTLSRSEKTLLSAQTAQTRAGHSFQKIVAFRRCSWLWSSSTPSPAGW
WYQLCIARGFLFPLPLPIWPSKPLCTVSEMAEQRYCVDYAKRGTAGCKKCKEKILKGMVR
IGKVVPNPFTESGGDMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDSEKELIN
QHISDLTSKAANTPKKKATVQAKISASGQITSPKKMPAASSDPSPKKFSGFTAKPGSSDE
VASASPRKPSLSTEKSDPKHKDCLLREFRKLCAMVADKPSYNVKTQIIQDFLQKGTSGDG
FRGDLYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFGCNQEDMVRDLEQGDVSETVRIFF
EQSKSCPPAAKSLLTIQEVDDFLTQLSKLSKEDDQQSLLQDVANRCTANDLKCIIRLIKH
DLKMNAGAKHVLDALDPNAYEAFKASRNLHDVVERVLRNQQESQKVPGLKRTLSVQATLM
TPVQPMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPHKV
AHFKDFIPKAFPGGHSMILDAEVLLIDNKTAKPLPFGTLGVHKKAAFQDANVCLFVFDCI
YFNDVSLMDRPLRERRKFLYDNMVEIPNRILFSEMKHVTKASDLADMINRVIREGLEGLV
LKDVKSLYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDP
DSQKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKNYYPDFIVPDPKE
APVWEITGAEFSKAEAHTADGISIRFPRCTRIRDDKDWATATSLPQLRELYQLSKEKSDF
TVVAMEEENSTAGSSGETDGQSRSSTPRKAPKQPSSKSPAKAKKPEASKPVEKSPLKKAT
EKRGEKRKASELEGEKGKMLLDIFTGVKLYMPPSVEGFSKIRRYFVAYDGDLVREFDTSS
ATHVMGDVEENPSAKHVSPDWIWECIRKRRLVAPC
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgccttctctgctcagggtacatctcctaaaggcagcaagaacccttagcagaagtgaa
aaaaccttgctttcagcacagacagctcaaacccgagctggccacagtttccaaaagatc
gttgccttccgcaggtgctcctggttgtggagcagcagcaccccatctccggctggctgg
tggtaccagctgtgcattgcccgtggctttctcttcccattgccactacccatttggccc
tcaaagcccctgtgcacagtctctgagatggcagagcagcgctactgcgtggactacgcc
aagcgaggcacggcgggctgcaagaagtgcaaggagaagatcctcaaggggatggtgcgc
atcgggaaggtggtgcccaacccattcacagagtccggtggggacatgaaggagtggtac
cacgtcaagtgcattttcgagaagctggagagggcccgggcaacgacaaagaagattgag
gacatcacggatttggagggctgggaggagctgcaggacagtgagaaggagctgataaac
cagcacatctcagatcttacttccaaagctgcaaacactccgaagaagaaggccactgtc
caggcgaagatttctgccagtggtcaaatcacctcccccaagaaaatgccggcagcttct
tctgatccatcaccaaagaaattttcagggtttacagctaagccgggcagctctgatgaa
gtggcttctgcatctccccgcaagcccagcttgtccacagagaagagtgacccaaagcac
aaggactgtttgctgcgggaattcaggaagctttgcgctatggtagctgacaaacctagc
tacaacgtcaagacccagatcatccaggacttcctgcagaagggaaccagtggagatggc
ttccgtggggatctctacctgacagtcaagctgctgttgccgggggtcataaagagtgtt
tacaacctgaatgacaagcagatcgtaaagctcttcagcaggatatttggctgcaaccag
gaggacatggtccgagaccttgaacaaggtgacgtgtctgagaccgtgcgcatcttcttt
gagcagagcaaatcctgcccccccgctgccaagagcctcttgacgatccaagaggttgat
gacttcctgacacagctctctaagctttccaaagaggacgaccagcaaagcttgctgcag
gatgttgcaaacaggtgcacggccaatgacctgaagtgcatcatccggttgataaagcat
gacttgaaaatgaatgctggagccaaacatgtgttggatgccttggacccaaatgcttat
gaggctttcaaagcctcgcgcaacctccacgacgtggtcgaaagggtgctgaggaaccag
caggagtcccagaaggtgccaggcctaaagaggactctcagcgtccaggccacgctgatg
acccccgttcaacccatgctggctgaggcctgtaagtccatcgagtacgccatgaagaaa
tgccccaacgggatgtactctgagatcaagtacgacggggagcgcgtccaggtgcacaag
aaaggcgaccacttcagctacttcagtcgcagcttgaaacctgtccttccacacaaggtg
gcccatttcaaggacttcatccccaaggctttcccagggggacacagcatgatcctggat
gcagaagttcttctaatagacaacaagacagccaagccccttccctttgggacacttgga
gtgcacaagaaagcagctttccaggacgccaacgtctgcctctttgtgtttgactgtatc
tacttcaacgacgtcagtctgatggacaggccgctccgtgagcgccgcaagtttctctac
gataacatggtggaaatccccaaccgaatcctcttctcggagatgaagcatgtcacgaaa
gcttcagaccttgctgatatgatcaaccgggtcatccgtgaggggctggagggtttggtg
ctgaaagacgtgaagagcctctatgagccaggaaaacgccactggctcaaggtgaagaag
gactacctcaacgaaggggcaatggctgacacggcagacctggtggtcttgggtgccttc
tacggccaagggagcaaaggtgggatgatgtccatcttcctcatgggctgctacgatccc
gacagccagaagtggtgcacggtgaccaaatgcgccggcggccatgatgacgccacgctg
gcccggctgcaaaaggagctggacatggtgaagatcagcaaggatcccagtaagattcca
agctggctgaaaataaataagaattattacccagacttcattgttccagatccgaaggaa
gcgccagtctgggagatcacgggggctgagttctccaaagcagaggcccacaccgccgat
gggatctccatccgctttccacgctgcacgcggatccgagacgacaaagactgggccacg
gccacctccctaccacaactccgggagctataccagttgtccaaggagaagtctgacttc
actgtggtcgccatggaggaggagaactccacagctggcagcagcggagagacagatggg
cagtcgaggtcttccactccccgcaaggctccaaagcagccctccagcaagtccccggca
aaagctaagaagcctgaagccagcaaacctgtagaaaagtccccactgaagaaggcaacg
gagaagcgaggagaaaagaggaaagcctctgagctggaaggagagaaggggaagatgctg
ctggatatcttcactggggtgaagctgtacatgcctccttccgtggaaggcttcagcaaa
attaggcggtattttgtcgcctacgacggagacctggtccgcgaattcgacacctcctca
gcgacacacgttatgggggacgtggaagagaatccatctgccaagcacgtctccccggac
tggatctgggagtgcatacggaaaaggaggctggtagccccttgctaa
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