Podarcis raffonei (Aeolian wall lizard): 128403078
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Entry
128403078 CDS
T09310
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128403078 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
praf03041
]
128403078 (PRPF8)
Spliceosome [BR:
praf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
128403078 (PRPF8)
Complex C
U5 SnRNP specific factors
128403078 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
128403078
NCBI-ProteinID:
XP_053223671
LinkDB
All DBs
Position
15:907365..931124
Genome browser
AA seq
2335 aa
AA seq
DB search
MAGVFPFRGPCPPMPAPLTPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMAENPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYS
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcgtgttccctttccgggggccctgccccccaatgcctgctcccttgacccca
ctgcctgactacatgtctgaagaaaagctgcaagaaaaagctcgcaagtggcagcagctg
caggccaagcgctatgccgagaagcggaagtttggttttgtggatgcgcagaaggaggat
atgccgccagagcacgtgcggaagatcatccgggaccatggggacatgaccaacaggaag
ttccggcatgacaagcgggtctatttgggtgccctcaaatacatgccccatgcagtcctg
aagcttctggaaaacatgccgatgccctgggagcagattcgcgacgtccctgttctgtac
cacatcacgggggccatctcctttgtcaacgagatcccgtgggtgatcgaacctgtctac
attgcccagtgggggtccatgtggatcatgatgaggcgggagaagagggaccggaggcat
ttcaaacgcatgcgcttcccgcccttcgatgatgaggagccgccccttgactatgctgac
aacatcctggacgtggagcccctggaggccatccagctggagctggatcctgaggaggac
gccccagtcctggactggttctacgaccaccagcctctgaaggacaaccgcaaatacgtc
aacggttccacctaccagcgctggcagttcaccctccccatgatgtccaccctctaccgc
ctggccaaccagctcctcacggaccttgtggacgacaactacttctacctctttgacctg
aaggcctttttcacctccaaggccctcaacatggccatcccaggggggcccaagtttgag
cccctggtccgagacattaacctgcaggatgaggactggaacgagttcaatgacatcaac
aagatcatcatccggcagcccatccggacagagtacaagatcgccttcccctacctgtac
aacaaccttccccaccacgtccacctcacctggtatcacaccccgaacgtcgtcttcatc
aagacggaggatccggacctgccagctttctactttgaccccctcatcaaccccatttcg
cacaggcactctgttaagagccaggagcctctccctgatgatgatgaggagtttgagctc
ccggagtttgtggagcccttcctgaaggagacacccctctacaccgacaacacagccaat
ggcatcgccctcctctgggcccctcggcccttcaacctgcgctctggcaggacccgcagg
gccctcgacatccccctcgtcaagaactggtaccgagagcattgccctgctgggcagccc
gtcaaagtccgcgtctcttaccagaagctgctcaagtactacgtcctgaatgctctcaag
caccgaccccccaaggcccagaagaagaggtacctcttccgctccttcaaggccaccaag
ttcttccagtcgaccaagctggactgggtggaggtggggctccaggtctgccgccagggc
tacaacatgctcaacctcttgatccaccgcaagaacctcaattatctccacctggactac
aacttcaacctgaagcccgtcaagaccctcaccaccaaggagaggaagaagtcccgcttt
ggcaatgctttccacctttgccgggaggtgctgcgcctgaccaagctggtggtggacagc
catgtccagtacaggctgggcaacgtggacgccttccagctttcagatggcctccagtac
atctttgcccacgtggggcagctgacggggatgtacaggtacaagtacaagctgatgagg
cagatccggatgtgcaaagacctgaagcacctcatctattaccgcttcaacacggggccg
gtggggaagggtcctggctgcggcttctgggcgcccggctggcgcgtctggctcttcttc
atgcgaggcatcactcccctgctggagcgctggctgggcaacctcctggccaggcagttc
gaaggccgccactccaagggggtggccaagactgtcaccaagcagcgtgtggaatcccac
tttgacctggagttgcgcgcagccgtcatgcacgacatcctggacatgatgcccgagggg
atcaagcagaacaaggccaggaccatcttgcaacacctgagtgaagcctggcggtgctgg
aaagccaacatcccctggaaggtgccagggctgccgacccccattgagaacatgatcctg
cgctacgtgaaggccaaggccgactggtggaccaacacggcgcactacaaccgcgaacgc
atccggcgcggagccaccgtggacaagacagtctgcaagaagaacttgggccgcctgaca
cggctgtacctgaaggcagagcaggagcggcagcacaactacctgaaggatggcccctac
atcacggcggaggaggccgtggccgtctacaccaccaccgtccactggctggagagccgg
cgcttctcgcccatccccttcccccctctctcctacaagcacgacaccaagctgctcatc
ctggccctggagaggctcaaggaggcctacagtgtgaagtctcggctgaaccagtcccag
cgggaggagctgggcctcattgagcaggcttacgacaacccccacgaggccttgtcccgc
atcaagcgacacttgctgacccagcgagccttcaaggaggtgggcattgagttcatggac
ctctacagccacctcgtcccggtctatgacgtggagcccctggagaagatcacagacgcc
tacctggaccagtacctgtggtacgaggccgacaagaggcgcctcttcccgccctggatc
aagccagcagacacggagccccctccgctgctcgtctacaagtggtgccagggcatcaac
aacctgcaggacgtgtgggagaccagcgagggcgagtgcaacgtcatgctggagtctcgc
tttgagaagatgtacgaaaagatcgacctgacgctcctcaacaggctcctgcgcctcatt
gttgaccacaacatcgccgactacatgacagccaagaacaacgtggtcatcaactacaag
gacatgaaccacaccaactcctacggcatcatccgcggcctccagtttgcctccttcatc
gtccagtactacggcctggtgatggacctgctggtgcttggcctgcatcgtgccagtgag
atggccggccccccgcagatgcccaatgacttcctcagcttccaggacattgccaccgag
gtggcccaccccatccgcctcttctgcagatacattgaccgcatccacatcttcttcagg
ttcactgccgatgaggcaagggacctgattcagcgctacctgacggagcacccggacccc
aacaatgagaacatcgtcggctacaacaacaagaagtgttggccccgagatgcccggatg
cggctgatgaagcacgacgtcaacctgggccgggccgtcttctgggacatcaagaaccgc
ctgccgcgctcggtcaccacggtgcagtgggagaacagctttgtctccgtctacagcaag
gacaaccccaacctgctcttcaacatgtgcggcttcgagtgccgcatcctgcccaagtgc
cgcacgagctacgaggagttcacacacaaggacggcgtctggaatctgcagaacgaggtg
accaaggagcggacggctcagtgcttcctgcgggtggacgatgaatccatgcagaggttc
cacaaccgggtcaggcagatcctgatggcctccggctccaccaccttcaccaagatcgtg
aacaagtggaacacggccctgattgggctgatgacctacttccgggaggccgtagtcaac
acccaggagctgctggacctgctggtgaagtgcgagaacaagatccagactcggatcaag
attggcctgaactccaagatgcccagccgctttccgccggtcgtcttctacacccccaag
gagctggggggcctggggatgctgtccatggggcacgtcctcatcccccagtctgacctc
aggtggtccaagcagacggacgtgggcatcacccacttccgctcgggaatgagccatgag
gaggaccagctgatccccaacttgtaccgctacatccagccatgggagagcgagttcatt
gactcccagcgggtgtgggccgagtatgccctcaagaggcaggaggccatcgctcagaac
aggcgcctgactctggaggatttggaggactcgtgggacaggggcatccctcgcatcaac
accctcttccagaaggaccgccacaccctggcctacgacaagggctggagggtcaggacg
gacttcaagcagtaccaggtcctgaagcagaacccgttctggtggacccaccagcgccac
gacgggaagctctggaacctgaacaactaccgtacggacatgatccaggcgctgggcggg
gtggagggcatcctggagcacaccctcttcaagggcacctacttcccaacctgggagggt
ctcttttgggaaaaggcttccgggtttgaggagtccatgaagtggaagaagctgaccaac
gcccagcgctcaggtctcaaccagatccccaacagaaggttcaccctctggtggtctccc
accatcaacagggccaacgtatacgtgggcttccaggtgcagctggacctgacaggcatc
ttcatgcacggcaagatccccacactgaagatctccctcatccagatcttccgggcccat
ttgtggcagaagatccatgagagcatcgtcatggacttgtgccaggtctttgaccaagag
ctggacgccctggagattgagacagtgcagaaggagacgatccaccccaggaagtcctac
aagatgaactcctcctgcgcagacatcctcctctttgcttcctacaagtggaacgtctcc
cgtccctccctgttggcagactccaaggacgtgatggacagcaccaccacccagaagtac
tggatcgacatccaattgcgttggggcgactacgactcccacgacattgagcgttacgcc
cgggcaaagttcctggactacaccacggacaacatgagcatctacccatctcccaccggc
gtcctcatcgccatcgacctggcctataacctgcacagcgcctacgggaactggttccct
gggagcaagcccctgatccagcaggccatggccaagatcatgaaggcgaacccggctctc
tacgtcctgcgggagcggatccggaaggggctgcagctctactcctccgagcccaccgag
ccctacctgtcctcccagaactacggggagctcttctccaaccagatcatctggtttgtc
gacgacaccaacgtctacagggtcaccatccacaaaacctttgaagggaacctgacgacc
aagcccatcaatggggccatcttcatcttcaacccccggacggggcagctcttcctgaag
atcatccacacctccgtgtgggcggggcagaagcggttgggccagctggccaagtggaag
acggctgaggaagtggcggccctgatccgctccctgcccgttgaggagcaaccgaagcag
atcatcgtcactcggaagggcatgttggaccctctggaggtgcacttgctggatttcccc
aacatcgtcatcaaaggctcggagctccagttgcccttccaggcctgcctgaaagtggag
aagttcggggacctcatcctgaaggccacagagccccagatggtgctcttcaacctctac
gacgactggctgaagaccatttcctcctacacggccttctcgcgcctgatcctcatcctc
cgggctctgcacgtgaacaacgaccgggccaaggtcatcctgaagccagacaagaccacc
atcacggagcctcaccacatctggcccaccctgacggacgaggagtggatcaaagtggag
gtgcagctgaaggacttgatcttggccgactatgggaagaagaacaacgtgaacgtggcc
tccctgacgcagtctgagatccgggacatcatcctgggcatggagatctctgccccttcg
cagcagcgccagcagatcgccgagatcgagaagcagaccaaggagcagtcgcagctgacg
gccacccagacacggaccgtgaacaagcacggcgatgagatcatcacctccaccaccagc
aactacgagacccagaccttctcctccaagacagagtggcgcgtcagggccatctccgct
gccaacctccacctgcggacaaaccacatctacgtctcgtcggatgacatcaaggagaca
ggctacacttacatccttcccaagaatgtcctgaaaaagttcatctgcatatcggacctg
cgtgctcagattgcaggatacctgtatggggtgagccctccagacaacccccaggtgaag
gagatccggtgcatcgtgatggtgcctcagtggggcactcaccagaccgtccaccttcct
ggccagctgccccaacacgagtacctcaaggagatggagcccctggggtggatccacacg
cagccaaatgagtcgccccagctctccccacaggacgtcaccacccatgccaaagtcatg
gccgagaacccctcttgggatggcgaaaagaccatcatcatcacctgcagcttcaccccc
ggctcctgcaccttgacggcctacaagctgacccccagcggctacgagtggggcaggcag
aacaccgacaaagggaacaaccccaagggctacctgccctcccactacgagagggtgcag
atgctgctctccgatcgcttcttgggcttcttcatggtgccagcgcaaggctcctggaac
tacaacttcatgggtgtccgtcacgatcccaacatgaagtacgagctgcagttggcgaac
cccaaagagttctaccacgaggtccaccgcccctcccacttcctgaactttgccctcctg
caggaaggggaggtgtactctgctgaccgagaggacctctactcctag
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integrated database retrieval system
