Podarcis raffonei (Aeolian wall lizard): 128403301
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Entry
128403301 CDS
T09310
Symbol
NXF1
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03008
Ribosome biogenesis in eukaryotes
praf03013
Nucleocytoplasmic transport
praf03015
mRNA surveillance pathway
praf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128403301 (NXF1)
03015 mRNA surveillance pathway
128403301 (NXF1)
03008 Ribosome biogenesis in eukaryotes
128403301 (NXF1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
128403301 (NXF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
praf03019
]
128403301 (NXF1)
03009 Ribosome biogenesis [BR:
praf03009
]
128403301 (NXF1)
Messenger RNA biogenesis [BR:
praf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
128403301 (NXF1)
mRNA cycle factors
Stress granule specific factors
128403301 (NXF1)
Ribosome biogenesis [BR:
praf03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
128403301 (NXF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_8
LRR_4
UBA_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
128403301
NCBI-ProteinID:
XP_053223948
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Position
16:11614415..11632442
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AA seq
625 aa
AA seq
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MADGGKGGYSEHDDRVGGGGGNRGFPGRRRKGRGPFRGKMYSEMNHHPRNWSGAGPSPRS
RLEEEDGDVLMSDPHDVLRSRYTPYGRPNRDRERGGLSNISLTVRQNLSTLERLGPRSNA
PKKSWFKVTIPYGRKYEKAWLINAIQNLCSVPFTPVELHYANNRVVFYVEEASAANALKQ
VSRKIVAPDGYKVVILLNPCSPPTSVQRELKPEEIEQLKLCMSKRYDGSQQALDLKNLHT
DPDLVAQNIDMVLSRRSCMLAVLRIIQENIPELLSLNLSDNKLYRLDDMAELPQKAPNLK
ILNLSSNQLKTDRDLDRLKDLKLEELWLDGNLLCDSFRDQSTYISAIRERFPKLLRLDGH
ELPPPIAFDLEAPTTLPPTKGSYFCSEDLKALILRFLQQYYTVYDSGDRQGLLDAYHDGA
CCSLSIPFSLHNHSRSTLAEYFKNSRNVKKLKDPTMRFRLLKHTKLNVVAFLSELPKTQH
DINSFIVDVCAQTNTLLSFTVNGVFKEVDGKCRDSVRAFTRVFIVVPAGNNGLCIVNDQL
FIRKATNKEIRKAFVMPAPTPSSSPVPTLTAEQQEMLQNFSLQSGMNLEWSQKCLLDNDW
NYAHAAQVFTQLKAEGKIPEVAFIN
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggccgacggaggaaaaggaggctacagcgaacatgatgaccgtgtgggtggaggtggt
ggcaacaggggcttcccagggaggaggcgaaaaggtcgaggccccttccgaggaaagatg
tacagtgagatgaaccatcacccacggaactggagcggcgcaggccccagtcctcgtagc
cgacttgaagaggaggatggagatgttctcatgagtgaccctcatgatgtgctgcgatcc
cgctacactccttacggtcgtccaaacagagatcgggagcggggaggtctaagcaatata
agcctcacagtgagacagaatctgagtaccctagaacggcttggccccagaagcaatgcc
cccaagaagagctggttcaaggttacaattccctatggaaggaaatatgaaaaggcctgg
ctgattaatgccattcagaatttgtgcagcgttcccttcactcctgtggagctacactat
gccaataatcgggtagtgttctatgtggaagaagcctctgcagccaacgccctcaaacag
gtgtctcgaaagattgttgccccagatggctacaaggttgtgatacttttaaacccatgc
agtccaccaacatctgtccagcgtgaattgaaaccagaggagattgagcagctgaagctt
tgcatgagtaaaagatacgatggttcccagcaggccttggatctaaagaaccttcacaca
gatccagatctggtagcccagaacattgacatggtgttgagtcgccgaagctgcatgcta
gctgtgctgcggatcatccaggagaacattcctgagctcctttctctgaacttgagtgac
aacaagctctatcggctggatgatatggctgagctgccccagaaggctcccaacctgaag
atcctcaatttgtcttctaaccagttgaagacagaccgtgacttggacaggttaaaagac
ttgaagcttgaggaactatggctggatggcaacctgttgtgtgatagcttccgtgaccag
tctacctacatcagcgccatccgcgaacggtttccaaagttgctgaggctggatggccat
gaactcccccctcctatcgcttttgatcttgaagcacctaccacgcttccccctactaag
ggcagctatttttgctctgaagacttaaaagcgttgatcctgcgatttctgcaacaatat
tacactgtctatgattctggggaccggcaagggttattggacgcctaccacgatggagcc
tgctgctccctgagcatccccttctcactacacaaccattctaggagcactctggctgaa
tacttcaagaacagcaggaatgtgaagaagcttaaggatcccaccatgcgcttcaggctc
ctcaagcacacaaagctaaacgttgtggccttccttagcgagctcccgaagactcagcat
gacatcaactcctttattgtggacgtctgtgcccaaacgaacacgctgctatctttcacc
gtcaatggggtcttcaaggaagtggatggcaagtgtcgcgactcggtgcgcgccttcacc
cgtgtgttcatcgttgtgcctgctggcaataatgggctgtgcattgtgaatgatcagcta
ttcattcgtaaggccaccaacaaggaaatccgcaaggctttcgtcatgccagcacccacg
ccctcctccagcccggtgcccacgctcacggcagagcagcaggaaatgctgcagaatttc
tcactgcagtcgggcatgaatcttgagtggtctcagaagtgcctcttggacaatgattgg
aactacgctcatgcggcccaggtttttacccagctcaaggctgaggggaagatcccagaa
gtggctttcatcaactga
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