Podarcis raffonei (Aeolian wall lizard): 128404113
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Entry
128404113 CDS
T09310
Symbol
LSM8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03018
RNA degradation
praf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128404113 (LSM8)
09123 Folding, sorting and degradation
03018 RNA degradation
128404113 (LSM8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
praf03019
]
128404113 (LSM8)
03041 Spliceosome [BR:
praf03041
]
128404113 (LSM8)
Messenger RNA biogenesis [BR:
praf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128404113 (LSM8)
mRNA degradation factors
5'-3' decay
Lsm complex
128404113 (LSM8)
Spliceosome [BR:
praf03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
128404113 (LSM8)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
RimP_C
Motif
Other DBs
NCBI-GeneID:
128404113
NCBI-ProteinID:
XP_053225421
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All DBs
Position
16:complement(24356518..24360698)
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AA seq
96 aa
AA seq
DB search
MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgacctccgctttggagaactacattaaccgtactgttgctgtaattacttcagacggc
cgaatgatcgtgggaactctcaagggttttgatcagaccatcaacctgattttggatgaa
agccatgaaagagtgttcagttcttcacaaggagtggaacaagtagtattgggattgtac
attgtaagaggtgataacgtggctgtaattggagaaattgatgaagagacggattcagcc
cttgacttggggaatatccgagcagaacctctgaactcagttgtacactga
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