Podarcis raffonei (Aeolian wall lizard): 128404150
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Entry
128404150 CDS
T09310
Symbol
THOC5
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03013
Nucleocytoplasmic transport
praf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128404150 (THOC5)
09122 Translation
03013 Nucleocytoplasmic transport
128404150 (THOC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
praf03019
]
128404150 (THOC5)
03041 Spliceosome [BR:
praf03041
]
128404150 (THOC5)
Messenger RNA biogenesis [BR:
praf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
128404150 (THOC5)
Spliceosome [BR:
praf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
128404150 (THOC5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
128404150
NCBI-ProteinID:
XP_053225522
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All DBs
Position
16:23529353..23553570
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AA seq
683 aa
AA seq
DB search
MSSDSSKKRKPKVIRTDGGPSEGKRGRPDTDQDAKYYSEEAEMDLRDPNKDYELYKETCQ
DLQRLMAEIQELKSKGNKDSASEIEERRIQSCVHFMTLKKLNRLAHIRLKKGRDQTHEAK
QKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIELVSVEEFYKEAPAEISKPEITL
ADPHQQTLSRLDWELEQRKRLAEKYKESLANKEKILKEIEVKKEYLSNLQPRLNSIMQAS
LPVQEYLSMPFDQVHKQYETARHLPPPLYVLFVQASAYGQACDKKLAVAIEGNVEEAKAL
CKPPEDSQDDESDSDAEEEQTTKRRRPTLGVQLDDKRKEMLKRHPLSVTVDLKCKDGSLL
LLTFYYLMNLNVMTTKAKVTAAAEMSMPISAGDLLCPDTLLSCLYPGDHGKRTPNPANQF
QFDKVGIVSLNDYVAELGHPYLWVQKLGGLHFPKDQPQNPVIADNSLSASHMERTMKLLK
MRLESRLALHKQFASLEHGILPVSSECQHLFPAKIVSRLVKWTALTYEDYLELSYTKDVV
EAGLAEDTHLYYMALIERGTAKLQAAVVLNPGYSSMPPIFSLCLNWKGEKTNSNDDNIRA
MESEVSVYYKELYGPKPGYQLLTNQLQRLCVVLDVYLETETHDNSVEGPKEFPQEKMCLR
LVRGPSRMKPFKFNHPQGFFSHR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcggactccagtaagaaacggaagccgaaggtcatccggacagatggaggccca
tcggaaggcaagaggggccggccagacactgatcaggatgccaaatattacagtgaagag
gctgagatggacctgcgggaccccaacaaagattatgaactttacaaagagacctgccag
gacctccagaggcttatggcggaaatccaggaactgaagagcaaaggcaacaaagacagt
gcttccgagattgaggagcgtcgcatccaaagctgtgtccacttcatgaccctgaagaaa
ctcaaccgtttggctcacatccggttaaagaagggaagggatcaaacccacgaggcaaag
cagaaagtggatgcttatcacctgcagcttcaaaatctgctgtacgaagtcatgcacctg
cagaaggagatcacaaaatgcctggaatttaagtccaagcatgaggagattgagctggtg
agcgtggaggagttttacaaggaggcccctgcagaaatcagcaagccggagattacgctc
gccgatccccaccagcagacactctcccgcctcgactgggagctggagcagcgcaagcgc
ctggcagagaagtacaaagaaagtctggcaaacaaagagaagatcctgaaagagatagaa
gtgaagaaggagtacctcagtaacctccagcctcggctcaacagcatcatgcaggcttcg
ctccctgtccaggagtacctttccatgccttttgaccaggttcacaagcagtatgagacg
gccaggcatctcccgccacccctctatgtgctctttgtccaagccagtgcctacggccag
gcctgtgacaagaagctggctgtggctatcgaaggcaacgtggaggaagccaaagcgctc
tgcaaacctccagaggactctcaggatgatgagagtgactcggatgccgaggaggagcag
accacgaagcgtcgccgcccaaccttaggggtgcagctggatgacaagcggaaggaaatg
ctcaagaggcacccattgtccgtcaccgttgacctgaaatgcaaagatggcagcctcctc
ctcctcaccttctactatctgatgaacctcaacgtcatgacgacgaaagccaaggtgacg
gcagctgcggaaatgtccatgcccatcagtgccggagacttgctgtgccccgacaccctc
ctgagctgcctgtatcctggagatcacggaaagaggactccaaaccccgccaaccagttc
cagtttgataaagtcgggatcgtgtccctgaacgactacgttgcagaactgggacaccct
tacctgtgggtgcagaagttggggggcctgcatttccccaaggatcagccccagaatcct
gtgattgccgataactcactgagcgctagccacatggagaggaccatgaaattgctcaag
atgaggctggagtcccgccttgctctacataagcagtttgcttcccttgaacatggcatt
ctgccggtctccagcgagtgccagcatctctttccggcaaagattgtgtcgcggttggtg
aagtggacagcgctcacgtacgaagattacctggagctgtcctacacaaaagatgttgtc
gaggccggtttggctgaggacacacacctgtactacatggccctgatagaaagaggaaca
gccaagctgcaggcagcggtggtgctgaatccaggctactcctccatgcctcccatcttc
agcctgtgcctgaactggaaaggggagaaaaccaacagcaacgacgacaacatccgggcc
atggagagcgaggtctctgtttactacaaagaactgtacggtcccaagccaggctaccag
ctcctgaccaaccagctgcagcgcttgtgcgtcgtcctggatgtctaccttgagacggag
acccacgacaacagtgtggaggggcccaaggagtttccgcaggagaaaatgtgtctgcgc
ctcgtcaggggccccagtcggatgaagcccttcaagttcaaccatcctcagggtttcttc
agccatcgctga
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