Podarcis raffonei (Aeolian wall lizard): 128404424
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Entry
128404424 CDS
T09310
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03082
ATP-dependent chromatin remodeling
praf03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128404424 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
128404424 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
praf01009
]
128404424 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
praf03021
]
128404424 (SMARCB1)
03036 Chromosome and associated proteins [BR:
praf03036
]
128404424 (SMARCB1)
Protein phosphatases and associated proteins [BR:
praf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
128404424 (SMARCB1)
Transcription machinery [BR:
praf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128404424 (SMARCB1)
SWI/SNF complex
128404424 (SMARCB1)
Chromosome and associated proteins [BR:
praf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
128404424 (SMARCB1)
PBAF complex
128404424 (SMARCB1)
SWI/SNF complex
128404424 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
128404424
NCBI-ProteinID:
XP_053226005
LinkDB
All DBs
Position
16:complement(27644810..27650946)
Genome browser
AA seq
386 aa
AA seq
DB search
MMMMALSKTFGQKPVKFQLEEDGEFFMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHENQRSHSPRRYHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTY
LREQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHEN
ASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIAS
AIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCS
ELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDA
EMEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggcgctgagcaagaccttcgggcagaagcccgtcaagttccagctggag
gaggacggcgagttcttcatgataggctctgaggtgggcaactacctgcggatgttccgg
ggctccctgtacaagcgctacccgtcgctctggaggcgcctggccacggtggaggagcgc
aagaagatcgtcgcctcttcccacgaaaaccaacggagtcacagtcccagaagatatcac
ggttataccacactggccacaagtgtgactctcttgaaagcctctgaagtagaagagatc
ctggatggaaatgatgagaaatacaaggcagtctccatcagcactgagcctcccacctac
cttagagaacagaaggcaaaaaggaacagtcagtgggttccgacccttcccaacagctcc
caccaccttgacgctgtgccatgctcgaccaccattaacagaaatcggatgggcagagac
aagaagagaactttccccctctgctttgatgaccacgacccagccgtgatccacgagaac
gcctcccagccagaggtgctggttcccatccgcctcgacatggaaattgacgggcagaaa
ctgagagacgcttttacatggaacatgaatgagaaactaatgaccccggaaatgttttcg
gagattctctgcgatgatctggatttgaatcccctgacctttgtcccggcgatcgcatca
gcaatacggcagcagattgaatcttaccctacagacagtattctggaggaccagtcagat
caacgcgtcattattaagctcaacatccatgtggggaacatctccctggtagaccagttt
gagtgggacatgtctgaaaaggagaactccccagaaaagtttgccctgaagctgtgctca
gaacttgggctgggcggcgagttcgtcaccaccatcgcttacagtatccgggggcagctg
agctggcatcagaagacgtacgcgttcagtgagaaccccctgccaacggtggagattgcc
attcgtaacactggggatgccgaccagtggtgccctctacttgaaaccctgacggatgca
gagatggagaagaaaattcgagaccaagacagaaacacgaggcggatgagacgtttggct
aacacagctccagcttggtaa
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integrated database retrieval system
