Podarcis raffonei (Aeolian wall lizard): 128405093
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Entry
128405093 CDS
T09310
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X1
KO
K28108
shortage in chiasmata 1
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
praf03036
]
128405093 (SHOC1)
Chromosome and associated proteins [BR:
praf03036
]
Eukaryotic type
Meiosis-specific proteins
Others
128405093 (SHOC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHOC1_ATPase
SHOC1_PDDEXK
SHOC1_HhH_tandem
Dna2
SHOC1_2HhH
Motif
Other DBs
NCBI-GeneID:
128405093
NCBI-ProteinID:
XP_053227265
LinkDB
All DBs
Position
17:15787254..15823887
Genome browser
AA seq
1660 aa
AA seq
DB search
MFSALKYHAIDYLHEKVARQRFSFELFSIHIPSGLDQDKNYCHNGILADDTYRRPWTRVT
PDLTQIAMDRPVLDLWNKYLGTEDFLEEKPTSSTLFHVHNEDIEIVPSSNPGSPFDIEDA
YVLMKNEDSYLNPKYAPVELEEPEEGFYIENEFVSMDYLAQYAKHLPTPHMLLSRINKFH
VQKPFSVQEPLLNFQGDKITEEDIFRECFAFKMNVTSEMNVKSEAKGKVHQDNFGKVSLK
NEETNSENLTSLGLISSEIQEIIGNENENLKITSEDLEVKITPETENLESCPPKELCASQ
SRSVLELSRPEHQTSVPKCQQLSAIESQPSYLQGGNTPMGETAKGNSPLAVDHVGLAGQE
GGREQRSTTDAHRGSGEHPLSPHEDILVFSHLEKDDCTNLTETCARPCVLEELNTDLSAG
DEVPHTNVEVVSKMSTSQTDNLEAKITPETENLEYCPPQELCASQSRSVLELSSPEHQTS
VPKCQQLSAIESQPSYLQGGNTPMGETAKGNSPLAGDHVGLVGQEGGREQRSTTDAHRGS
GERPLSPHEDILMFSHLEKDDCINLTETCARPCVLEELNTDLSTGDEVLHTNVEGVSKMS
TSQTAKCLEETSSFANNRMESSSVPDFSGTKGSCLSPQKKEKLLPMLLEPASGVNLQHTT
STVGDNSAPTENIRKMKLQTETRKPGHFGNPEEENDQVQLVSYKKASAEAKNTLGNNMPD
GFDLPRKCRDDFDLLSNFIMLRSQRMIMQNEEPNNVDIQAEVLDAKEKSPILENNISPLT
LNEAVPMEKQTKENEEIVSIQIKASESQFQAYHILEAAVNPVLKELMSFGMPKWKFRTLN
FDTTRYFLKQQEKVISDAFKQGVTGIKEGREIAVFKHAVALHLLVTVRDLLLTCNLNTAL
GYLFNAKDRYKDFLDSRLDNICRLLEIVQISMQKQEVNPKIKELHHQMSKWVQSNMNDQN
KVVIVTRMGFDEETDVLINTISTVQGLKIVYLDSEERGTFLESQDVISSLERSSCVVVYN
QNIGPDFPWTHFSLVVEYNYSEKSCWLDICKNLNVSYITFITTVPETFGIEEVSPDNFGC
VLLELPIPYVFLTSEGLLNTPEILQLLESKYNITFIERKCCEALQFFGSTDRYIVMTVDE
CTAIVIQNMEELGYEKSSDSIVLRLVVLSLQYSACWIIFYSQERLNSEYSLAGNTLHHLT
LIYGALVSFAQKSEDFDVKVVLTPGVEETALLVRQIADHILMTSQRHPQEWLDKSWLSVL
PSEEEKSLFTFPCMNPLVAQVMLKKSSSLEWLLSATFDQLHALLPEVPEKVLKHFSDITS
LYILNPPAEPKLPEETVPLQKNIKGSIRSCSEIPFSKAVLSGFQGHSPFTEYFGNYGEVQ
NSKNCFPLYYQNKSHTPLKSGGKHSSLIAPSVPYQEKVCFFQDDTGIERQQYIQFAKKME
VEKRTTSSLLPPDDLKGRLHTNSEATMPYLVYNLDGTNTYLENSAQNRMYRSKAAGQKLA
HQDIENVLEVKKQPLVKQWESSKDSKSSWHLVSSREDCPIQQNSQSFLGELGVTGYSGPK
FQFEEMFWGNQSSMLAMDSSPHDSSFSKELSSPDRFFNLDFPITGEYTRKKNPNVLSSNP
RECGSAAGLKCTQLPQLKKRRLTYEKDPGRSDGQTRLKFL
NT seq
4983 nt
NT seq
+upstream
nt +downstream
nt
atgttttcagccttgaagtaccatgcaatagactacttacatgagaaagtggctagacag
agattttcatttgaattgttctcaattcacatcccttctggtttagatcaagataaaaat
tattgtcataacggaatcttggctgatgatacatataggagaccctggacaagagttaca
cctgacctcactcaaattgctatggatcgtcctgtgcttgatctctggaataaatatctt
ggcacagaagacttcttggaggagaaacccacttcaagcactctcttccatgtccataat
gaagatattgaaattgttccaagttcgaatcctggttcgccgtttgacatagaagatgct
tatgtgcttatgaaaaatgaagacagttatttaaatcctaaatatgctccagtggaactt
gaagagccagaagaaggtttttatattgaaaatgaatttgtttcgatggactatttagct
caatatgctaaacatctacctactccgcatatgctcttgagccgaataaacaaattccat
gtacagaaacctttcagtgtacaggaaccccttttaaattttcaaggagataagataacg
gaagaggacatcttcagagagtgttttgctttcaaaatgaatgtgacatctgaaatgaat
gtgaaatctgaagcaaaagggaaagtacaccaggacaattttggtaaagtttccttaaag
aatgaggagacaaacagtgagaatctcacaagcttggggctaatctcttcagaaattcag
gaaattataggaaatgaaaacgagaatcttaaaataaccagcgaagaccttgaagtgaaa
attactcctgagacagagaatttggaatcttgtcccccaaaagaactttgtgccagtcag
agcagaagtgtactggaactcagcaggccagagcatcaaacttccgtacctaaatgtcaa
cagctttcagctatagaatctcaacccagctacttgcaaggaggtaacacccccatgggt
gagacggccaagggaaattcccccttggctgttgaccatgtgggtctggctggccaggaa
ggaggcagagagcaaaggtccacaaccgacgcccaccggggaagcggtgagcatccattg
tctccacatgaagacatactggtgttcagccacctggaaaaagatgactgcactaattta
acagaaacttgtgctagaccatgtgttttagaagaattgaacacagatttaagcgctgga
gacgaggttcctcataccaatgtagaagtggtctcaaaaatgtctacctctcagacggat
aaccttgaagcgaaaattactcctgagacagagaatttggaatattgtcccccacaagaa
ctttgtgccagtcagagcagaagtgtactggaactcagcagcccagagcatcagacttcc
gtacctaaatgtcaacagctttcagctatagaatctcaacccagctacttgcaaggaggt
aacacccccatgggtgagacggccaagggaaattcccccttggctggtgaccatgtgggt
ctggttggccaggaaggaggcagagagcaaaggtccacaaccgacgcccaccggggaagc
ggtgagcgtccattgtctccacatgaagacatattgatgttcagccacctggaaaaagat
gactgcattaatttaacagaaacttgtgctagaccatgtgttttagaagaattgaacaca
gatttaagcactggcgatgaggttcttcataccaatgtagaaggggtctcaaaaatgtct
acctctcagacggctaaatgccttgaagagacaagttcctttgctaacaacagaatggag
tcttctagtgtccctgattttagtggaacaaagggttcttgtttgtctcctcaaaagaaa
gagaaacttcttccaatgctcttggagcctgcatcaggtgtcaatctacagcacacaacg
tctactgtaggtgacaacagtgcacctactgagaacatcagaaaaatgaaactgcagact
gagacaagaaaaccagggcattttggaaaccctgaagaagaaaatgatcaagtccaactt
gtcagttacaagaaggcatctgctgaagcaaagaacacattaggaaataacatgcctgat
ggatttgatctgcctaggaaatgtagagatgattttgaccttttgagcaactttatcatg
ctgaggtctcaacgtatgatcatgcaaaacgaggaaccaaacaatgtggatattcaagca
gaagttctggatgctaaggagaagagcccaatactggaaaacaatatcagtcctcttacc
cttaacgaagcagttcctatggaaaagcaaacaaaggaaaatgaagaaatagtttccatt
cagattaaagcatcagagagtcaatttcaagcatatcatatccttgaagctgcagtgaat
ccagttttgaaagagctcatgagttttggcatgcctaaatggaaatttcgcacccttaat
tttgacaccaccagatattttttaaaacagcaggagaaagtgatcagtgatgcttttaaa
caaggtgtgactggtatcaaagaggggagagagattgcagtattcaaacatgctgttgct
cttcatttactggtaacagttcgagacctgttattaacatgtaacttgaacactgcatta
ggatatttgttcaacgcaaaagatagatataaggacttcctggactccaggctggataat
atttgtagattgctggagattgtgcagatttccatgcagaagcaagaagtcaatcccaag
ataaaagaactgcatcatcaaatgtccaaatgggtgcagagtaatatgaatgatcagaat
aaggtagtaattgtgactagaatgggttttgatgaagaaacagatgtactaatcaacacc
atcagtacagtgcaaggcttgaaaattgtgtatttagattctgaggaaagagggactttt
ctagagagccaagatgtaataagtagtttggaaagatcctcttgtgtggttgtatataat
cagaacattggacctgatttcccttggactcatttttcattagtggtggagtataattat
tcagaaaaatcctgctggcttgatatttgcaaaaatctgaatgtttcttacataactttc
ataaccactgttccggaaacatttggaattgaagaggtttctccagataattttgggtgt
gtcctcctggaactgccaattccatatgtttttctgacatctgagggccttctcaatacc
ccagaaattcttcagttactggagtccaagtacaatattacatttattgagaggaagtgc
tgtgaggcattacagttctttggaagcacggaccgttacatcgtgatgactgtagatgaa
tgcactgctatcgttattcagaacatggaagaacttggttatgaaaaatcttctgatagc
attgtgttaaggcttgtggtgctgtcactccagtacagcgcctgttggattattttctac
tcccaagaaagattaaattcagagtatagcctagctggaaatactctgcatcacctaacc
ttgatttatggagccttggtttcatttgcacagaagtcggaagactttgacgtaaaggtg
gttcttacaccaggagttgaagagacagcccttttggttcgtcagattgctgaccacatt
ctgatgacttctcaaagacatcctcaggaatggctagacaaatcttggctttccgtcttg
ccgtcagaggaagagaaatccttgtttacatttccatgcatgaatcctctagtggctcaa
gtcatgttaaagaaaagctcttcactggagtggcttctgtcagcaacctttgaccagctt
catgcgcttctgcctgaagtgcctgagaaagttctgaagcactttagtgacatcacatca
ctgtacatcttgaaccctccagcagagccaaaacttccagaagaaactgtgccacttcaa
aaaaacataaagggctctatcaggtcttgctctgaaatccccttttccaaggcggtgtta
tctggctttcaaggacacagtccctttactgaatattttggaaactatggtgaagtacag
aacagcaaaaattgtttcccactttactaccaaaataagtcccatactcctctgaaatca
ggtggaaagcacagcagcttaatagcaccttcagtaccataccaggaaaaagtttgtttc
tttcaggatgatacaggcatagagcggcaacagtacatccaatttgcgaaaaaaatggaa
gtggaaaaaagaacaacttcatcactgctaccaccagatgatctgaaaggacgtctccat
actaactctgaagctacaatgccatatttagtgtacaacctggacggaacaaatacgtat
cttgaaaatagtgcgcaaaacagaatgtaccgttcaaaagctgcaggccaaaagcttgct
catcaagatattgaaaacgtactggaggtgaaaaagcagccacttgtaaagcaatgggaa
tctagcaaggattccaaatcttcttggcatcttgtctctagcagagaagattgtccaatc
cagcagaactctcagagttttctaggagaacttggtgtgacaggatatagtggtccaaaa
tttcagtttgaggagatgttttggggtaaccagtcatccatgctagcaatggattcatct
ccccatgattcaagtttcagcaaagaattatctagtccagatagattctttaatttggac
tttccaataacaggagagtacacaagaaagaaaaatcccaatgtgttatcatctaatcca
agagaatgcggttcagcagcaggtttaaaatgcacccagttaccacagctgaaaaaaaga
cgtctaacctatgaaaaagaccctgggagaagcgatggtcaaacacgtctcaaattcctt
taa
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