Podarcis raffonei (Aeolian wall lizard): 128405473
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Entry
128405473 CDS
T09310
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
praf01009
]
128405473 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
praf03019
]
128405473 (HDAC6)
04131 Membrane trafficking [BR:
praf04131
]
128405473 (HDAC6)
03036 Chromosome and associated proteins [BR:
praf03036
]
128405473 (HDAC6)
Enzymes [BR:
praf01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
128405473 (HDAC6)
Protein phosphatases and associated proteins [BR:
praf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
128405473 (HDAC6)
Messenger RNA biogenesis [BR:
praf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
128405473 (HDAC6)
Membrane trafficking [BR:
praf04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
128405473 (HDAC6)
Chromosome and associated proteins [BR:
praf03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
128405473 (HDAC6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Me-amine-dh_L
Motif
Other DBs
NCBI-GeneID:
128405473
NCBI-ProteinID:
XP_053228161
LinkDB
All DBs
Position
17:36657414..36694014
Genome browser
AA seq
1098 aa
AA seq
DB search
MASDVGDAQILEPPSVSPLETRAPTRKTKKKGGLPDAKRKGRAKRLNKDAEDLLSSMQRL
DLTTECATPVGTGLVWDERMTQFHCTWDESFPECPERLVAIRDKLLQCGLLERCIPVEAQ
EISEEEILLVHSPEYLALMKSTETMSEAELRSLSDTYDSVYLHPNSYRCACLAAGSVLQL
VEKVLAGKLRNGLALVRPPGHHAQRDKMDGYCMFNNVGLAAQYARQKLGVERVLIVDWDV
HHGQGTQYLFEDNPSILYFSIHRYEGGSFWPHLLDSDSHAVGRGRGEGYNINLPWNQIGM
WDADYLSAFLHILLPVALEFQPQLVLVAAGFDSVIGDPKGEMSATPACFAHLTHLLMPLS
GGKLVLSLEGGYNLQSLAEGTCAVLKALLGDPCPLLESPLTPCASALCSISQTLAVHSKY
WKNLRRTSTDVPRENGGEAGIVFPPGHPLPAAEILSKSAAELMLPRPPSCTGLVYDEKMT
EHYNMWDSQHPELPQRVSRIFQRHGELRLTERCCRLPARLASEEELRMCHSLAYVETVKS
TAAMKPRDLHRQGDQYNSIFICASSYECARLAAGSAFSAVEAVLSGQVQNAVAIVRPPGH
HAESDTACGFCFFNSVALAARYAQRLAGRPMRVMILDWDVHHGNGTQHMFEDDPSVLYVS
LHRYDNGTFFPTSEDADYDRVGLGPGEGFTLNVPWNCPRMGDPEYLAAFHQIVMPVSYEF
NPELVLVSAGFDAARGDPLGGCLVTPECYAHMTHLLLGLAGGKVAVVLEGGYNLESISES
MTMCTRSLLGDPLPPLGRLKAPHPSALQSLANAAAVHRKYWASLRLEVPAPLWEKPRTRA
GKGTPIPDEIPPEAPQKLLQSPGAQPVNTLNDAVLALSSLQLEDRLAEEAETASSSLSPD
SSPVGEEVGHKVGASPGEAEPAVDTQKEGMSTGSSTGGAESPGKEAEVSPPAGPPILAEV
ILLDEAAGGCSSSCDPLEEDLADEGLFYAVTPLPWCPHLDSVLPVPSLGLNVLEPCAECG
SMAENWVCLICYKVCCGRYIKQHMVAHNSESGHPLVLSFADLSVWCYGCQAYVHHPILFE
AKSQAHRLKFGMDMAVPS
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgatgttggagatgcccaaatattagaacccccttctgtgtcgcctttggag
actcgcgcacccacgaggaagactaagaagaagggagggttgccagacgccaaacggaaa
gggcgggccaagcggttgaacaaagatgcggaggatctgctctcaagcatgcagcgattg
gatctcaccacagaatgtgctacaccagtggggactggcctggtttgggatgaacggatg
acacagtttcactgcacatgggatgaaagtttcccagagtgtccagaacggctggtggcc
atacgagataaattgctgcaatgtggactgctggaacgttgcatcccagttgaggctcaa
gaaatttctgaggaagaaatcctcttggttcacagccccgagtacttggccctgatgaaa
tctactgaaaccatgagtgaggctgagctgagatctctgtcggacacgtatgattctgtc
tatctgcacccaaattcctaccgctgcgcctgcctcgctgctggttctgtcctgcaactt
gtggagaaggtgctggctgggaagctgcgtaacggcctggctctggtcaggccacctgga
caccacgctcaacgtgacaagatggatggctactgcatgttcaacaatgtaggcctcgca
gcccaatatgcgcggcaaaaattgggagtggagcgggtgcttattgttgactgggatgtg
catcatggacaaggcacccagtacctctttgaggacaatcccagcatcctctatttctcc
atccatcgctatgaagggggcagcttctggccccaccttttagactctgacagtcatgct
gtgggcagaggtcggggagagggctacaacatcaacctgccctggaatcagatagggatg
tgggatgctgactacctctctgcctttttgcatatcctgctgcctgtggccttggagttt
cagccccagttggtcctggttgctgctggttttgactctgtaatcggtgaccccaagggg
gagatgtcagccacgccagcatgttttgctcacctgacacatctgctgatgccgctgtct
ggaggcaagctggttctgtctctggagggtggctacaatctccagtccctggcagaggga
acctgcgcagtcctcaaggctcttttaggagacccctgtcctctcctggagtctcctctt
accccgtgtgccagtgccctctgctccatttcccagacccttgcagttcacagcaagtac
tggaagaacctccggagaaccagtactgatgtgcctcgggagaatggaggagaggcgggc
atagtttttccaccaggccaccccttgccagcagccgagatcctatccaagtcagcggct
gaactgatgctaccccggcccccttcctgcactgggctggtctatgacgagaagatgacg
gagcattacaacatgtgggacagtcagcatccagagctgcctcagagagtctcccggatc
ttccagcgccacggggagcttcgcctgacggaaaggtgctgccggctcccggcccggctt
gcctctgaagaggagctgcggatgtgccacagcctggcctacgtggagacggtgaagtcg
acggcggccatgaagccccgtgacctgcatcgccagggcgaccagtacaattccatcttc
atctgcgccagctcctatgagtgcgctcggctggcagccggttccgcgttcagtgcagta
gaggccgtgctctctgggcaggtgcaaaacgctgtggccattgtccggccccctgggcac
catgctgaatcagacaccgcctgtggcttctgcttcttcaactctgtggccttggcagca
cgatatgcacagcgccttgctggacgtcctatgagggtgatgatactagactgggatgtt
caccatggcaacgggacacagcacatgtttgaagatgatcccagtgtcctgtatgtctcc
ctccaccgctatgacaatggaactttcttccccacctccgaggatgcagactatgatcgt
gtgggcctggggcctggggagggcttcacccttaacgtgccttggaactgtccccgcatg
ggggaccctgagtacctggctgccttccatcagatagtcatgcctgtcagctatgagttc
aatccagagctggtcctggtttctgctggctttgacgctgctcgaggggacccgctgggc
ggatgcctcgtgactccagaatgctacgcacacatgacccatctgctcctgggtctggcc
ggaggcaaggtggcagttgtcttggagggcggctacaacctagaatcgatctcggaatcc
atgaccatgtgcacacgcagcctcctgggggatcctctgcccccgctgggacgcctcaag
gccccccaccccagtgccctgcaatctttggccaatgcagccgctgtgcaccgcaagtac
tgggcaagcctgcgactggaagtgcctgctcctctgtgggagaagcccaggactcgagct
gggaaaggaactcccattccagatgaaatccccccggaggccccccagaagctgcttcaa
agccccggcgctcaacctgtgaataccttgaatgatgctgttttggctctgagctccctc
cagctggaagaccgccttgcggaggaggcagagacagcttccagttccctctcacccgat
tccagtccggtgggcgaagaggttgggcacaaggttggggcctcccctggagaagctgag
ccagcggtggatacccagaaggaaggcatgtcgacagggagctccacgggtggagcggag
tctcctggcaaagaggcagaggtaagcccaccggctggccccccaatactagcggaggtt
attctgcttgacgaagctgcaggcggctgctcttcctcctgtgacccgcttgaagaagac
ctggcagatgaagggttgttttatgctgtgactcccttgccatggtgcccccaccttgac
tcggtgctccctgtgccttcccttggcttgaatgtgctggagccctgtgcagaatgtggc
agcatggcagagaattgggtctgtctgatttgttacaaggtttgctgtggccgctacatt
aagcaacatatggtagctcacaactcagagtctgggcacccgctggttcttagctttgcg
gacctctctgtctggtgctatggatgccaagcctatgtccaccacccgattctctttgaa
gccaagagccaggctcaccggctgaagtttggcatggacatggcggtaccttcctaa
DBGET
integrated database retrieval system
