Podarcis raffonei (Aeolian wall lizard): 128405942
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Entry
128405942 CDS
T09310
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf04510
Focal adhesion
praf04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128405942 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128405942 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
praf00536
]
128405942 (COL2A1)
Glycosaminoglycan binding proteins [BR:
praf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128405942 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
128405942
NCBI-ProteinID:
XP_053228962
LinkDB
All DBs
Position
2:complement(9709050..9805209)
Genome browser
AA seq
1488 aa
AA seq
DB search
MFSFVDSRTLVLLAATQVILLAVVKCQDEDIQEAGSCVQNGQRYSDKDVWKPERCRICVC
DTGTILCDNIICEEPRDCPNPEIGFGECCPTCPTDQPAASGRQPGPKGQKGEPGDIKDVV
GPRGPPGPQGPSGEQGPRGERGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGLGGNF
GAQMATGFDEKAGGAQMGVLQGPMGPMGPRGPPGPPGSPGPQGFQGSPGEPGEPGTGGPM
GPRGPPGPPGKPGDDGESGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGSK
GEVGAAGAKGEAGAAGEAGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPV
GPAGAPGFPGAPGAKGEAGPTGARGPEGAQGSRGESGTPGSPGPAGAPGNPGTDGIPGAK
GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQAGEPGIAGFKGEQGPKGEPGPSGPQ
GAPGPAGEEGKRGGRGEPGAAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPPGLG
GPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP
GVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAGGPPGPAGPAGERGEQGAP
GPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGSQGLQGPR
GLPGTPGTDGPKGATGPAGAVGAQGPPGLQGMPGERGAAGISGPKGDRGDIGEKGPEGAP
GKDGGRGLTGPIGPPGPAGANGEKGESGPPGPAGAAGARGGPGDRGEPGAPGPAGFAGPP
GADGQPGAKGEQGETGQKGDAGAPGPQGSSGAPGPQGPTGVTGPKGARGAQGPPGATGFP
GAAGRVGPPGPNGNPGSAGPPGAPGKDGPKGARGDAGPTGRAGDPGLQGPAGPPGEKGES
GEDGPPGADGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGPGDRGPP
GPVGPPGLTGPSGEPGREGNPGSDGPPGRDGSPGVKGDRGETGAVGGPGAPGPPGSPGPV
GPTGKQGDRGEAGAQGPMGPAGPAGARGMPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQ
GLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGETGQA
GPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKGPDPMRYMRSDQASSNLRQHDAEVDATL
KSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNMET
GESCVYPKPSSIPKKNWWTSKSKDKKHIWFGETINGGFHFSYGDENLAPNTANIQMTFLR
LLSTEGSQNITYHCKNSIAYMDEASGNLKKALLIQGSNDVEIRAEGNSRFTYSALQDGCT
KHTGKWGKTIIEYRSQKTSRLPIIDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcaaggactctagtgctcctagcagccacgcaagtcatttta
ttagcagttgtcaaatgtcaggatgaggatatacaggaggcaggcagctgtgtacagaat
gggcagaggtatagtgataaagatgtgtggaaacctgagcgctgccggatctgtgtctgt
gatactgggactatcctctgcgacaacataatctgcgaagaaccgagagactgtcccaac
cctgagataggcttcggagagtgttgccccacctgcccaactgaccagcctgctgccagt
ggtcggcaacctggccccaagggacaaaaaggagaacctggcgatattaaagatgttgta
ggaccaagaggaccccctggaccacagggaccttcaggtgaacaaggaccaaggggagaa
cgcggagataaaggagagaagggtgctcctggaccacgtggcagagatggcgaacctggt
acacctggcaaccctgggcctcctgggcctccaggcccccctggccttggtggaaacttt
ggtgctcagatggctacaggatttgatgagaaagcaggcggcgctcagatgggagtgctg
caaggaccgatgggacctatgggaccacgaggccctccgggacctccaggatctcctggc
cctcaaggatttcaaggcagccctggtgaacctggtgaacctggtactggcggtccaatg
ggtccccgtgggccacctgggccacccggaaaacctggcgatgatggtgaatctggcaaa
cctggcaaatcgggagagcgtgggccacctgggcctcagggtgcccgaggtttccctggg
accccaggtcttcccggcgtaaaaggtcacagaggttatcctggattagatggttccaag
ggagaagttggcgctgcaggtgctaagggtgaagctggcgctgctggagaagctggatca
ccaggtccaatgggtccccgtggtcttccaggtgagagaggacgtcctggcccatctggt
gctgcgggtgctcgtggtaacgatggtctccctggtccagctggtccacccggacctgtc
ggccctgctggagctccaggtttcccaggtgcaccaggtgcaaagggtgaagctggcccc
actggcgctcgtggccctgagggcgcccaaggctctcgtggtgaatccggaacccccggt
tcccctggaccagcgggagctcctggcaaccctggaactgatgggatccctggtgccaaa
ggatcagcgggtgctcctggcattgctggcgctccgggatttcctggcccacgtggacca
cctgggcctcaaggtgcaactgggcctttgggtcccaaaggccaggcgggagaacctggg
attgcaggcttcaaaggtgaacaaggtcccaagggtgaacctggaccttcaggcccacaa
ggagctcccggaccagctggagaagaaggcaagagaggcggccgtggtgagccaggagct
gcagggcccattggaccacctggagagaggggtgctcctggaaaccgtggcttcccaggt
caggatggattggccggtcccaagggtgctcccggtgaacgtggacctcctggccttggg
ggtcccaaaggagccactggagatcccggccgtcctggagagcctggcttgcctggcgct
aggggtctcactggtcgccctggtgatgctggtccccaaggcaaagttggcccatctgga
gccccaggtgaagatgggcgacctggcccacctggtccacaaggtgcccgtggccagcct
ggtgtcatgggtttcccaggcccgaaaggtgcaaatggtgaacctggtaaagctggtgag
aaaggacttcctggtgctcctggcctaagaggtcttcctggcaaagatggcgagacggga
gcaggtggaccgccagggcctgctgggccagcaggagagagaggcgaacagggtgccccc
ggaccttctggattccaaggacttccagggcccccaggtcctccgggtgaaggtggaaag
ccaggtgaccagggtgttcctggagaggctggtgctcctggtcttgttggtcccagaggc
gagcgcggcttcccaggtgagcgtggatctccaggctcccaaggcttgcagggtcctcgt
ggtcttcccggcactcctgggaccgatggacccaagggcgcgactggtcctgctggtgcc
gttggagcacaaggccccccaggtcttcagggaatgcctggtgagagaggagctgcaggt
atttctggaccaaagggagacaggggtgatattggtgaaaagggaccagaaggtgctcct
ggcaaagatggcggcagaggcttgactggtcccattggtcctcctggccctgctggcgcc
aatggagagaagggtgaatctggcccccctggcccagctggtgctgcaggtgctcgtggt
ggccccggtgaccgtggtgaacctggtgctcccggccctgctggattcgctggtcctcct
ggtgctgatggacaacctggtgctaaaggcgagcaaggggaaactggccagaagggagat
gctggggccccaggcccacaaggttcatctggtgctcctggcccacagggtccaactggt
gtgactggtcctaagggagcgcgtggtgcacagggacctccgggtgctactggattccct
ggcgcagcaggaagagttggaccaccaggccctaacggcaatcccggttctgcaggccct
cccggcgctcctggtaaagatggtcccaagggtgctcgtggcgatgcaggccccactggg
cgtgctggcgatcctggtttgcaaggtcctgctggtcccccaggcgagaagggagaatct
ggagaagatggccctcctggtgctgatggcccacctggacctcaaggcttggcaggtcag
agagggatcgttggtctccctggtcagcgcggtgagagaggcttccctggtctgccgggt
ccttctggtgagcctggtaaacaaggagctcccgggggccctggagacagaggtccacct
ggcccagttggtccaccaggcctgactggtccctctggcgaacctggacgtgagggcaat
cctggctcagatggtcccccaggcagagatggttcccctggcgtgaagggtgatcgtggt
gagactggtgctgttggtggtcctggagctcccggcccacctggttctcctggtcctgtt
ggtccaactggtaaacaaggagatagaggggaagcaggtgctcaaggtccaatgggtcct
gctggtcctgcaggggcacgcggcatgcccggtccacaaggtccgcgtggtgacaagggt
gaggctggcgaggcaggagagagaggtctgaagggtcacaggggattcactggcctgcag
ggtcttcctgggcctcccggtccttctggcgatcaaggtgcatcaggtcctgctggtcct
tctggtcccaggggtcccccaggtccagttggcccctctggcaaagatggctctaacgga
atgcctggccccattggccctcccggtccccgtggtcgtagtggagaaactggccaagct
ggtcctcctggaaaccctggaccccctggtcctcctggcccacccggacctggcattgac
atgtccgcctttgccggcctgggtcagacggagaaaggccccgaccccatgcgctacatg
cgatccgaccaggcttctagcaacctgaggcagcatgatgccgaggtcgatgccaccctg
aagtcgctcaacaaccagatcgaaagcatccggagccccgagggcagtaggaagaaccca
gctcgtacctgccgtgacctaaaactctgccaccctgaatggaagagcggcgactattgg
attgatcccaaccagggttgcactttggatgccataaaggttttctgcaatatggagaca
ggagagagctgtgtttaccccaagcctagcagcattcccaagaagaactggtggacaagc
aagagcaaagacaagaagcacatctggtttggagagacaatcaatggaggtttccacttt
agctatggagacgagaacctggctcctaacacagccaacatccagatgaccttcttgcgc
ctcttgtctactgaaggctctcaaaatatcacctaccactgcaagaacagcattgcctac
atggacgaggcttccgggaaccttaagaaagctctcctgatacagggatccaacgacgtg
gagatcagagccgagggcaatagcaggttcacatatagcgccttgcaggatggatgcacg
aaacacactggtaaatgggggaagacaatcattgaataccgttctcagaagacctcacgc
ctgcccatcattgacattgcacctatggacattggcggagctgatcaagaatttggtgtt
gacattggcccggtgtgcttcttgtaa
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integrated database retrieval system
