Podarcis raffonei (Aeolian wall lizard): 128406849
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Entry
128406849 CDS
T09310
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03013
Nucleocytoplasmic transport
praf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128406849 (UPF3B)
03015 mRNA surveillance pathway
128406849 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
praf03019
]
128406849 (UPF3B)
Messenger RNA biogenesis [BR:
praf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128406849 (UPF3B)
mRNA cycle factors
P-body specific factors
128406849 (UPF3B)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
128406849
NCBI-ProteinID:
XP_053230607
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All DBs
Position
Z:40548721..40561276
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AA seq
538 aa
AA seq
DB search
MLLPPPPASRSPPPVPARAAAANGRADLARRGRREASAARAGALTGEGLVGLSAFAMKED
KENARPKEKRGAPVTPTGSVGAAAGAVAADAKAGGEPDRLERPKDKKEILSKVVIRRLPP
SLTKEQLEEHLQPLPEHDYFEFFANDSSLYPHMFSRAYINFKNQEDIVLFRDRFDGYVFV
DHKGLEYPAVVEFAPFQKAAKKKSKKKDAKAGTIEDDPEYKKFLENYSADDEKLTSTPET
LLEEIEARNKELIAKKTTPLLNFLKNKQRLREEKREERRRRELERKRQREEERRKWKEEE
RRKRKEAEKTKKVERCPEKERDKSKDEPKIKLLKKPEKDERDFEKKEKAKKPEKESLREE
KPASATSSMPARRSDGEAKEEKSKKLEDDCGKDYREREREYDRDREYERMQRERDKLRRQ
EEERRRQKERFEKEKVFRRKEEDVKRERDSLREKGKRAELAEYMGNAEKSEKVTKEEKKE
DMAKRDRIRNKDRPAMQLYQPGARNRSRLSGYDESSAKSPDQGVDKKQECETSNTKEE
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgccgccgccgccggcgtcccgctctccccctcccgttcctgcgagagcagcg
gcggccaatgggcgcgcggatctggcgaggcgcgggcggagggaggcatcggcggcgcgg
gcgggggcgttgacgggcgaaggcctggtggggctctccgcattcgcaatgaaggaagac
aaggagaacgcgcggccgaaggagaagcgcggggctcccgtcaccccgaccggcagcgtg
ggagcagcggcgggggcggtggcagcggacgccaaggcgggaggcgaaccggacaggctg
gagcgtccgaaggacaagaaagagatcctgagcaaggtagtgattcgacgcctgcctccc
agcttgaccaaggaacagcttgaagaacatctccaacctttgcctgaacatgactatttt
gaattctttgctaatgactccagtttgtaccctcacatgttttccagagcatacatcaac
tttaaaaaccaagaagacattgttctgttcagggatcgctttgatggttatgtttttgtt
gatcacaaaggtctagaatatcctgccgtagtggaatttgcgccgtttcaaaaagcagcc
aaaaagaagagtaagaaaaaggatgccaaagctggaaccattgaagatgatccagaatat
aagaagtttttggaaaactatagtgctgatgatgagaaattaacatccacccctgagaca
ttgctggaggaaatagaagcaagaaacaaagaattaatagcaaaaaaaacaactcctctg
ttgaacttcttgaagaataaacagcggcttagagaagaaaaacgagaggagaggaggagg
agagaactagagaggaaaagacaacgagaagaagaaagaagaaaatggaaagaggaagaa
agaaggaaaaggaaagaagcagaaaaaacaaagaaagtggagcgatgcccagaaaaagaa
agggacaaatcaaaggatgaaccaaagattaagctacttaagaagccagaaaaagatgaa
agagactttgaaaagaaagaaaaggccaagaaaccggagaaagagagcctgagggaggaa
aagccagcaagtgcaaccagcagtatgccagccaggcgctccgatggggaggcgaaggag
gagaagtccaaaaaattggaagatgactgtggaaaagactatagagaaagagagagagaa
tatgaccgagacagagagtatgagagaatgcaaagagaaagagacaaactccgacgccaa
gaagaagagagaaggaggcagaaagagcgcttcgagaaagagaaggtttttagaagaaag
gaggaagatgtgaaaagggaaagagactcattgcgagagaaagggaagagagctgaattg
gcagagtacatgggcaatgcagaaaaatctgagaaagtaaccaaagaggagaaaaaagaa
gatatggctaagagggatcgcattagaaacaaggatcgcccagccatgcagctctaccag
ccaggagctcggaatcgaagtcgtttgtcaggctatgatgaaagctctgcaaagtcaccc
gatcaaggagtggataagaaacaggagtgcgagaccagtaacacaaaagaagagtga
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