Podarcis raffonei (Aeolian wall lizard): 128407227
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Entry
128407227 CDS
T09310
Symbol
DDX5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128407227 (DDX5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
praf03041
]
128407227 (DDX5)
03009 Ribosome biogenesis [BR:
praf03009
]
128407227 (DDX5)
Enzymes [BR:
praf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128407227 (DDX5)
Spliceosome [BR:
praf03041
]
Complex A
U1 snRNP components
U1 related factors
128407227 (DDX5)
Complex B
128407227 (DDX5)
Ribosome biogenesis [BR:
praf03009
]
Eukaryotic type
Pre-60S particles
Helicases
128407227 (DDX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
128407227
NCBI-ProteinID:
XP_053231289
LinkDB
All DBs
Position
2:complement(23220948..23227685)
Genome browser
AA seq
600 aa
AA seq
DB search
MPGYSSERDRGFGGPRFGGSRGGSLGGKKFGNPGEKLTKKKWNLDELPKFEKNFYQEHPD
VARRPMQEIEQYRAGKEITVKGHNCPKPVMNFYEANFPANVMEVIQRQNFTEPTAIQAQG
WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQ
QVAAEYGRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTY
LVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLKEHVHINIGA
LELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRD
GWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSED
YIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGSGRSR
GDRRDRYSAGKRGGFGFRERENFERTYGAVGKRDFGAKAQNGGYGAQGFGNGTAFGNNFG
GAGMQGGFRAGTPAYQNGYDQQYGNNMANMHGAMNQQQYAYPATGTTPMIGYPMPANYTQ
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgcctgggtattccagtgagagggaccgcgggtttggtggccctcgttttggaggaagt
cgagggggatctttaggtgggaagaagtttgggaaccctggagaaaagcttacaaagaaa
aaatggaatctagatgagcttcctaaatttgagaagaacttctaccaggaacatcctgat
gttgccagacgtcctatgcaagagattgaacaatacagagcaggaaaagagatcacagtt
aaaggccacaattgtccaaaaccagttatgaatttctatgaagctaactttccagcaaac
gttatggaagttattcagagacagaactttacggaaccaactgctattcaggcacaaggt
tggcctgttgccttgagtggactggatatggttggcgtagcacaaactggatcggggaaa
acactgtcttatttgttgcctgctatagtacacataaaccatcagccattcctagaacga
ggagatgggcccatttgtttggtgctggcaccaactcgagagctggctcagcaggtgcag
caagtggctgcagaatatggcagagcctgccgtttgaagtctacttgtatttatggaggt
gctcctaagggaccacaaatacgtgacctggaaagaggtgtggagatttgcattgcaaca
cctggtaggctcatagacttcttggaagctggaaaaaccaatctccggcgatgcacttac
ctcgttcttgatgaagctgacagaatgcttgatatgggatttgagcctcagattcgaaaa
attgtagaacagattagacctgacaggcagactctgatgtggagtgcaacatggcccaaa
gaagttaggcagcttgcagaagatttcttaaaagaacatgtacacatcaacattggcgca
ttggaactaagtgcaaaccacaatattctgcagatagtggatgtatgtcatgatgtagag
aaagatgataagcttattcggttgatggaagaaataatgagtgagaaagaaaacaaaact
attgtctttgtggagaccaaaagaagatgtgatgatcttactagaaaaatgaggagagat
gggtggccagcaatgggtatccatggtgacaaaagtcaacaggaacgtgactgggttcta
aatgaattcaaacacggaaaggctcctatcctgattgctacagatgttgcctccagaggt
ctagatgtggaagatgtgaaatttgtcatcaattatgactaccctaactcctctgaggac
tatatccaccgaattggacgaactgcccgcagtaccaaaacaggcacagcatacacattc
tttacacctaacaatataaagcaagtaagcgacctcatctctgtacttcgtgaagcaaat
caggcaatcaacccaaaattgctccagttggttgaagacagaggttcaggtcgttccaga
ggtgaccgacgtgacagatactctgcgggcaaaagaggtggatttggttttagagagagg
gaaaactttgaaagaacctatggtgcagtgggcaagagagacttcggtgcaaaagctcag
aatggtggctatggtgctcaaggttttggtaacggaactgcctttggaaacaactttgga
ggagctggcatgcagggtggatttagggctggcacaccagcttaccagaatggttatgat
cagcagtatgggaataacatggcaaacatgcacggtgcaatgaaccagcagcagtatgcg
taccctgcaactggcaccacgccaatgataggttatccaatgccagcaaactatacccaa
taa
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