Podarcis raffonei (Aeolian wall lizard): 128407262
Help
Entry
128407262 CDS
T09310
Name
(RefSeq) cholesterol transporter ABCA5-like isoform X1
KO
K05648
ATP-binding cassette, subfamily A (ABC1), member 5
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
128407262
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
praf02000
]
128407262
Transporters [BR:
praf02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA5, 6, 8, 9, 10 subgroups
128407262
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
RsgA_GTPase
AAA_29
MMR_HSR1
AAA_23
cobW
AAA_9
Motif
Other DBs
NCBI-GeneID:
128407262
NCBI-ProteinID:
XP_053231379
LinkDB
All DBs
Position
2:complement(25404666..25453705)
Genome browser
AA seq
1643 aa
AA seq
DB search
MSLDPPRQIGVWRQTRALLYKNCLVKWRTKKASVQEVLIPLTFLGLLIIISMIQPNKRHD
EVPDCNLDSTSCSSISEFIIGYTPVTNMTRTIMHKVTSEYCPEAEDAKEFLSEAEMEEAS
LQDPENFVGVIFNDSMSYHLRFPTVVAPRSLILPTSIASCSTPSKMCEAETYWHYGFAGI
QIYIDAAIIELKTNKSVLEELESAKAVKMGKSAVVEIDNFFRAVILIYLVIAFSPFGYFL
TIHIMTEKEKKLKEFLMVMGLQDTAFWLSWVLLYTSLILVMSLLMSVIATFSSLFPQSSS
FVIFLLFFLYGLSSISFAFLLTSLFKKVNYAGSAQFFTTVAFGAVGLSIALLEDFPKSFV
WSLSPLCECPFLIGVVQVMHLEDYEEGAIFSHITHGPYPLIIAYTLLTLDSMLYLLLGIY
FDQVIPGEYGLRRSFFFFLKPSFWVKRTRNYKELYESSINGSLEFNEIVEPISSEFQGRE
AIRINNVQKSYIKKGETVEALKSLSFDIYEGQITALLGHSGTGKTTLMNILCGLSPPSDG
FASIYGCRVSEIDEMLDIRKVIGVCQQSDIYFDVLTVEENLSIIASVKGIPPNDMIQEVQ
KVLLDLDMHPFKDNQAKKLSGGQKRKLSVGFAVLGDPKVLLLDEPTAGMDPCSRQTVWNL
LKNGKATRVTVFSTHFMEEADIVADRKAVISQGMLKCLGSSLFLKTKWGIGYRLSMQIDR
YCNTEGTAFLIKQHIPGASLLKQTEEQLVYALPFNDMDKFSALFADLDMHSHLGVISYGV
SMTTLEDVFLKLEVEAEINHTDFSAFNSEQAEDEMDAKSMDELEQSLLMLSETKSCVLSN
KSLWKKQVSTLAKVHFLNFKRDIKSLTEVFLLLTVFLGVEIYMFNMYRQYFKNAVVPVTF
SPDLYFLKPNETHHKYKSSLLVQNFTGSDIDDIISSLISQNVHTEIFNGSDYVSIAPHNG
ALNVSHTGKSYIFTAAFNCTMKHSLPVMMNIISNLYLHNLNVTENIHVWSSSFFQKITDR
GFIMVLVVQALTVGVTITGLPSYFSMDNAENHRIKAYTQLKLSGLYPSAYWCGQALVDIL
LYYIILLLMVGILFIVHHGIIFSPEEALAVVLCLIGYVPSVILFHYVVSFTFKTIQNTKE
FWSLIFSTVALICVIVIDVAFIQSYAIAIIIHTCFSIFIPIYPLIGCLISLTEVAEKLGR
NMERNTERLLVSTIAPYLQCVIWLFLLRYLEVKCGGKSMRNDPFFRTPAKLKARKSPDVP
FDEDEDEDVVAERLRVKEMTTSQSCQEKPAILVSNLHKDYDERTDFLLGRKIKKVATNQV
FFCVKKGEIMGLLGPNGAGKSTLINMLVGEVEPTSGQVLMGDYSLGENNKDSSMRFMGYC
PQTNPLWPDITLQEHFEIYGAIKGMSESNMKEFIKCISHALDLKEHLQKRAKDLGVGIKR
KLCFALSMLGNPNVTLLDEPSTGMDPVGIQQMWKAIRAALKSKERAAILTTHYMEEAEAV
CDRVAILVSGKLRCIGTVQHLKSKFGRGYFLEMKLREVPDLQQKERLQRMVLRIFPNASC
QKSIASVLAYKIPKEDVHSLAVSFSKLEEARHAFNIEEYSFSQATLEQVFMELVKEQEEE
ESNFGTLNGTISWERSQGERVIF
NT seq
4932 nt
NT seq
+upstream
nt +downstream
nt
atgtctctggatcctccgagacaaataggagtgtggcgacagacaagagctcttttatac
aagaactgtctagttaaatggaggactaaaaaggctagtgttcaggaagtcctgattcca
cttacctttttaggtttgctaataataataagcatgattcagcctaacaaaagacatgat
gaagttccagattgtaatcttgattctacgagttgctccagcatctctgagtttattatt
ggctacacaccagtgactaatatgacaagaacaatcatgcataaagtgacttcagaatac
tgcccagaagcagaagatgcaaaagaatttctgagtgaggcagaaatggaagaggccagt
cttcaggaccctgaaaactttgttggtgtcattttcaatgattccatgtcctatcacctc
agatttcctactgtagtggctccaagatctttaatcctcccgacatcaatagccagttgt
tcaaccccttccaaaatgtgtgaagctgaaacatactggcattatggatttgcaggcata
cagatctacattgatgcagcaattatagagttgaagactaataaatcagttttggaagaa
ctggaatcagcaaaagctgtcaagatgggaaagtctgctgttgtggaaatagataatttc
tttcgtgcagtaatcttaatttacttagttattgccttttcaccttttggctattttttg
actattcatattatgacagaaaaagagaagaaactgaaggaatttttaatggtaatggga
cttcaagacacagctttttggctttcttgggtcttgctctacaccagtctgattcttgtc
atgtcccttctcatgtcggttattgcaacattttcttcgctctttccccaaagtagcagc
tttgtgatatttcttctttttttcctatatggattatcctccatttcctttgcatttttg
ctaacctctcttttcaaaaaagtgaactatgctggttcagctcagtttttcacaactgtg
gcttttggtgctgtgggcctgagcattgccctgttggaagattttccaaagtcttttgtg
tggtcactaagcccactgtgtgaatgcccctttttaattggtgttgtacaggtgatgcat
ctggaagattatgaagaaggagctattttctcacatataactcatggcccttatccacta
attattgcttatacgctattgacccttgatagtatgctttacctgctcctagggatttat
tttgatcaagtgattccaggggaatatggattgcggcgaagctttttcttcttcctaaag
ccctcattttgggtaaagcgaacaagaaattataaggaattgtatgaaagcagcattaat
ggaagcttagaattcaatgagattgttgagcctatatcttccgagttccagggaagagaa
gctattagaatcaataatgtccagaaatcatatattaaaaagggtgaaactgtggaggct
ctgaaaagtttatcctttgacatttatgagggtcagatcacagccttacttggacatagt
ggaacaggaaaaacaacattaatgaacattctttgtggattgtccccaccttctgatgga
tttgcatcgatttatggctgtagagtttcggaaatagatgaaatgctagatataagaaag
gtaattggagtctgccagcagtcagatatatattttgatgtattaaccgtggaagagaat
ttatcaataatagcttcggttaaaggaatacctcccaatgatatgatacaagaggtccag
aaagttttactcgatttggatatgcacccctttaaagataaccaagctaaaaaactaagt
ggaggacagaaaagaaaactgtcggttggatttgcagttcttggagatccaaaggtatta
ctcttagatgaaccaaccgctggcatggatccatgttcacggcaaacagtttggaacctc
ctgaaaaatggaaaagccactcgagtgactgtgttcagtacccatttcatggaagaagca
gacattgttgctgatcggaaagctgtgatttctcaaggaatgctgaaatgccttggctcc
tctctgttccttaaaacaaaatggggaattggctaccgcttgagtatgcaaatagacagg
tactgtaacacggaaggcacagcatttttgatcaagcagcatatccctggagccagtttg
ttaaagcagactgaagagcagcttgtgtatgccttaccttttaacgacatggacaaattt
tcagcactgtttgctgatctagacatgcattcccatttgggtgttatttcttatggcgtt
tccatgactaccttggaagatgtgttcctcaagctggaagttgaagctgaaattaaccac
acagatttcagtgcatttaactcggagcaagctgaagatgaaatggatgcaaaatctatg
gatgagttagagcaaagcctgctaatgctatctgagacaaaatcgtgtgtactaagcaat
aagtctctttggaaaaaacaggtctctactctggcaaaagttcattttcttaatttcaaa
cgtgacatcaaatcactcacggaagtgtttttgctattaacagtgttccttggtgttgag
atttatatgttcaatatgtatcggcaatacttcaaaaatgcagtggttcctgttacgttt
tctccagacttatactttcttaaaccaaatgaaactcatcataaatacaaaagcagtctc
cttgttcagaacttcactgggtcagacattgatgacatcatcagctcactcataagccag
aatgtacacacagaaatattcaatggcagtgattatgtatcgattgctccccacaatgga
gcattaaatgtatctcatacaggcaagagctacatctttacagctgcttttaactgcacc
atgaaacattccttaccagttatgatgaatatcattagcaatctgtatctgcacaattta
aatgtaacagaaaacatccatgtctggagtagttcgttcttccaaaaaatcactgacaga
ggtttcataatggtgctggttgttcaagctttgacagtaggagtcacaataactggattg
ccatcatatttttccatggacaatgcagaaaaccacaggatcaaagcctatactcaactt
aaattatcaggtctttatccatctgcttactggtgtgggcaagcactagttgacattctt
ttatattatattattctccttctgatggtcggaatcttgttcatagtacaccatgggatt
attttttcccctgaggaggctcttgctgtggttttgtgccttattggctacgtaccatcg
gtaattctgttccattatgttgtctctttcaccttcaaaacaatacaaaacaccaaagaa
ttttggtcattaattttttcaacagtagccttgatttgtgttattgttattgatgtagct
tttattcagtcgtacgcaatagcaattataattcacacatgcttttctatcttcatccca
atatatcctcttattgggtgtctcatttctctaactgaggtagcagagaagcttggtcga
aatatggaaagaaatacagaaaggctattggtttcaacaatagcgccctacttgcaatgt
gtcatttggctcttccttctacgctatcttgaggttaaatgtggaggcaaatcaatgaga
aatgacccatttttcagaactcctgcgaagctaaaggccaggaaatcgccagatgtgcca
tttgacgaggatgaggatgaagatgttgtggctgagaggttgagggttaaggagatgaca
acgagccagagctgtcaggagaaacctgccattttggtcagcaatttacataaagattat
gatgaaaggacagattttcttcttggaagaaaaatcaagaaggtggcaaccaatcaggtc
tttttttgtgtaaaaaaaggagaaattatgggactgctaggccccaatggagctgggaag
agcacactgattaatatgttggtgggagaagtagaaccaacctcaggccaggtgctgatg
ggagattattctttaggcgaaaataacaaggatagctccatgagatttatgggatactgt
ccacagacaaatccactttggcctgatattacattgcaggaacattttgaaatttatggt
gctatcaaaggaatgagtgaaagtaacatgaaagaattcataaaatgcatttcccatgca
cttgacctcaaggaacatctacagaaaagagcaaaggaccttggagtaggaatcaaacga
aagttatgctttgctcttagtatgcttggtaaccctaacgttactctattagatgagcca
tctactggtatggaccctgtagggatacagcagatgtggaaagcaattcgggcagcctta
aaaagtaaggagagagcagcaattctgacaactcattatatggaagaagcagaggctgtg
tgtgatcgagtcgcaatcttggtgtctggaaaattaaggtgcattggtacagttcaacat
ctcaagagtaaatttggcagaggatatttcttagaaatgaaattaagagaagtgccggat
ttacagcagaaggagcgtcttcaaaggatggttttgcgcatctttccaaatgcaagttgc
cagaaaagcattgcctctgttttggcttacaaaattccaaaggaagatgtccactcgctt
gcagtatctttttctaaactggaggaagcaagacatgcttttaatattgaagagtacagc
ttttctcaagcaacactggaacaggtatttatggaacttgtcaaagagcaagaagaggaa
gagagcaattttggaaccctaaatggaacaattagttgggaaagatcccagggggagaga
gttattttctga
DBGET
integrated database retrieval system
