Podarcis raffonei (Aeolian wall lizard): 128407648
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Entry
128407648 CDS
T09310
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128407648 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
praf03019
]
128407648 (XAB2)
03041 Spliceosome [BR:
praf03041
]
128407648 (XAB2)
Messenger RNA biogenesis [BR:
praf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
128407648 (XAB2)
Spliceosome [BR:
praf03041
]
Complex B
Other components
Prp19-related factors
128407648 (XAB2)
Complex C
128407648 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_2
Suf
TPR_12
TPR_8
ARM_TT21_C
ARM_TT21
TPR_15
RPN7
TPR_1
NRDE-2
TPR_16
CKAP2_C
LTN1_E3_ligase_6th
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
128407648
NCBI-ProteinID:
XP_053232251
LinkDB
All DBs
Position
2:complement(43325425..43341166)
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AA seq
895 aa
AA seq
DB search
MTNRTVAGQVTQAEERARALNRRCACASLPCASLARSEWEASKMPELETVLGKRELFFEE
EDLQYEEEILRNPFSVKCWIRYIEFKQNAPKHILNLIYERALKELPGSYKLWYNYLKQRR
KQVKSKCVTDPSYEEVNNCHERALVFMHKMPRIWLDYCQFLMDQCRITRTRRTFDRALRA
LPITQHHRIWPLYLKFVRLYPLPETAVRVYRRYLKLSPENAEEYIEYLRSIDRLDEAAVR
LAAVVNDERFISKEGKSNYQLWHELCDLISQNPDKVKSLNVGAIIRGGLTRFTDQLGKLW
CSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVFDSYAQFEESMIAAKMETSSEMGR
EEEDDVDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHKRVKLYEGKPREIINTYT
EAVQTVDPFKATGKTHTLWVSFAKFYEVNGQIEDARTIFEKATKVNFKQVDELASVWCEY
GEMELRHENYDQALRILRKATAIPAKKAEYFDSSEPVQNRVYKSLKVWSMLADLEESLGT
FKSTKAVYDRILDLRIATPQIIINYGLFLEEHSYFEESFKAYERGISLFKWPNVYDIWNT
YLTKFTDRYGGKKLERARDLFEQALDGCPQKYAKTIYLLYAKLEEEYGLARHAMAVYERA
TQAVQPSEQYDMYNIYIKRAAEIYGVTHTRSIYEKAIEVLTDEHAREMCLRFADMECKLG
EIDRARAIYSYCSQMCDPRTTANFWQTWKEFEIRHGNEDTIREMLRIKRSVQATYNTQVN
FMASQMLKVYSNATGTVSDLAPGQSGMDDMKLLEQRAEQLAAEAERDQPQAKEKILFVRS
DASRSELAELSKQANPDEIDIDLDDGDESEDNEPDEVQLEQQSVPSAVFGGLRDD
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atgaccaataggactgttgctggccaagtgacgcaagcggaggagagagcccgagctctg
aaccgcagatgtgcttgtgcgtcattgccgtgcgcctcgctcgctcgctcggagtgggaa
gcgtccaagatgccggagctggagacggtgttggggaagcgggagctctttttcgaagag
gaagacttgcaatatgaagaagaaatattgcgcaaccccttctctgtcaagtgctggatc
cgctacattgagttcaagcaaaatgctcccaagcatatcttgaatctgatctatgagaga
gctcttaaggaattgccaggcagctacaagctatggtataattatcttaagcagcgacgg
aagcaggtaaagagcaagtgtgtaacggatcccagctatgaagaagtgaacaactgtcat
gagcgtgcccttgtcttcatgcacaagatgcctcggatatggctagattactgccagttt
cttatggaccagtgtcggatcacccgcacccgtaggacctttgaccgagcactccgggcc
ctgcccatcacacagcaccatcgtatctggccactctacctgaagtttgtgcgcctgtat
ccattacccgagacagctgtgcgggtctaccgcaggtacctgaagctgagcccggagaat
gctgaggaatatattgagtacctgcgctccattgaccgcctggatgaggctgctgtccgc
cttgccgctgtggtgaatgatgaacgcttcatctccaaggaggggaaatccaactatcaa
ctgtggcacgagctctgtgacctcatctcgcagaatccggacaaggtgaagtcgctcaat
gtgggggccataatccggggcggcctgactcgcttcaccgaccagctgggcaagctgtgg
tgttccttggcagactactacatccgcagtgggcattttgagaaggctcgcgacgtctac
gaagaagccatacagactgtgatgacagtgcgggatttcactcaggtgttcgacagctac
gcccagtttgaggagagcatgatcgctgccaagatggagaccagctctgagatgggacgt
gaggaggaggatgatgtggacctggagctgcgcctggctcgctttgagcagctgatcaca
cgccggcccttgcttcttaacagtgtcctcttgcgccagaatcctcacaacgtccacgag
tggcacaagcgggtgaagctgtatgaaggcaaacctcgcgagatcatcaacacatacaca
gaagcggtgcagactgtcgacccctttaaagccaccggaaagacacatacgctctgggtt
tcttttgccaaattctacgaggtcaatggacagatcgaagacgccagaaccatttttgaa
aaggctaccaaggtcaacttcaagcaagtggatgagctggccagcgtgtggtgcgaatat
ggcgagatggagttgcggcacgagaactatgaccaagcgctgcgcatcctgcggaaagcc
acagccatcccagctaagaaagcagagtattttgattcctcagaacctgtgcagaaccgt
gtctacaagtccctcaaggtttggtcaatgttggctgacctggaagaaagtcttggcacc
ttcaagtctactaaagccgtgtatgaccgcattctggacctgcgcattgccaccccacaa
atcatcattaactatggcctcttcctggaagagcacagctactttgaagagagcttcaag
gcgtatgagaggggcatctcattgttcaagtggccaaacgtgtatgacatttggaacacc
tatcttaccaaattcaccgaccgctatggtggcaagaagttggagcgtgcacgggacctc
tttgaacaggctctagatggctgcccccagaaatacgctaaaactatctacttgctgtat
gccaaactggaggaagaatatgggctggcacgccatgccatggccgtgtatgagagggcc
actcaggctgtgcagccttcggagcagtatgacatgtacaatatctacatcaagagagca
gctgaaatctatggggtcacacacacacgtagcatctatgagaaggctattgaggtgctg
acagatgaacacgctcgggagatgtgcctgcgctttgccgacatggagtgcaagctgggc
gaaatagaccgagctcgggccatctattcctactgttcgcagatgtgtgatccccgaact
actgccaatttctggcagacatggaaggaatttgagatccggcatgggaacgaagacact
atccgggagatgcttcgcattaaacgaagcgtgcaagcaacgtacaacacacaagtcaat
ttcatggcctctcagatgctgaaggtgtacagcaatgccacgggcacagtgtctgacctg
gcacctgggcagagtggcatggatgacatgaaactgttagagcagcgggcggagcagttg
gcagctgaagcggagcgagatcagccccaagctaaggagaagatcctgtttgtcaggagt
gatgcttcccgcagcgagctggctgaactctccaaacaggctaatcctgatgagatagac
attgatttggatgatggagatgagagtgaggataatgagcctgacgaggtgcagctggag
cagcagagtgttccttccgctgtgtttggaggccttagggatgattga
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