Podarcis raffonei (Aeolian wall lizard): 128408976
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Entry
128408976 CDS
T09310
Symbol
SKIC2
Name
(RefSeq) SKI2 subunit of superkiller complex protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128408976 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
praf03019
]
128408976 (SKIC2)
Enzymes [BR:
praf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128408976 (SKIC2)
Messenger RNA biogenesis [BR:
praf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
128408976 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
128408976 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
128408976
NCBI-ProteinID:
XP_053235050
LinkDB
All DBs
Position
2:complement(113882638..113924438)
Genome browser
AA seq
1273 aa
AA seq
DB search
MEMERIVLPPRGPLELPLSILEVGCAGRFELITQEEGPHGDRFPLTTLPHGLPPHAEDLA
SELEQHFLSSPDWLPIHHFERSHRFWPREKDIQSLFEVDVTPVHSTLQAERNPTTGELLG
FREALVDNMGLSAKNSLSFQRAPGPPVEALRGSATNYPFWPGGMDEPSLEQIKTQEDQEE
DIDFENDLLTVPPGWKKGVEFTRQELKASPGLLNLTHLLGALDTFELGASSDEEGKEKAE
EGRKRTKKGKGAKGEEAPPAEPAPLQRANSLEELVLKEVTPAPKSAPQAAPAPAAASEPP
KEQWAIPVDVSSPVDDFYKRIPDPAFKWPFEPDVFQKQAILHLEKHDSVFVAAHTSAGKT
VVAEYAIALSQKHMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLHPDASCLIMT
TEILRSMLYNGSDVLRDLEWVIFDEVHYINDSERGVVWEEVLIMLPDHVNIILLSATVPN
TLEFADWIGRIKRKKIYVISTLKRPVPLEHYLYTGNSQKTQNELFLLVDARGTFLTKGYY
DAVDAKKERASKHSQTFGAKQPMHPGAGAGQDKNIWLSLIDMLRKKDQLPVVAFTFSRNR
CDDNASMLTTVNLTTTNEKSEIHVFFQKCISRLKGTDRQLPQVLHMVDLLKRGIGVHHSG
ILPILKEVVEMLFSKGLVKILFATETFAMGVNMPARTVVFDSIRKHDGTNFRDLVPAEYI
QMAGRAGRRGLDTTGMVIILCKNQAPEMADLHRMMLGKPTQLQSQFRLTYTMILNLLRVE
ALRVEDMMKRSFSEFHTRKDSKVHEHRIAQLSCILANMEASDLSGQLGDLEEYYHVVREL
QETRELIQRRVMESMNGLKALSVGRVIVVKNQEHRNALGVILQVSSDAANRAFSTLVMCE
KKLSEGDAAACKEAGLPSPPEVPLPDDLLHTKLFLPEGPCGHTIKKLGPSDIFGITNKTL
RVNAERILEDFKKRQMPRFRNDPPGPSAATATQELLRLAEGSPEGLPLLDPVNDLQLKDL
EVVEGVVKARRLEEALLGFQCVHSPHFHTEFVRFRERQQVLEELEQLRFLLSDQSLLLLP
EYHQRVQVLRSLGYINEGGAVELKGSVARQISNHELLLTQLLLDNALTDLRPEEIVALLS
CTVCQVRTRVEPQLPSVLQKGIEHIRSVAEEIALLQRKCGLQESVEDFVEQYKFGLVEVV
YEWARGMPFAEIARLTDVQEGIIVRCIQRLDETCREMRNAARVTGEPTLHAKMEAASNMI
KRDIVFAASLYTQ
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atggagatggagaggatagtcctgccccccagggggcctctggagttacccctctccatt
ttggaggttggatgtgccggccgttttgagctcatcacccaagaggaaggacctcatgga
gacagattcccgctaaccacgctgcctcacgggttgccccctcacgctgaggatctggcc
tctgaactggagcagcacttcctcagcagcccggactggcttcccatccaccactttgaa
aggtctcacaggttctggccccgcgagaaagacatccagtcgctctttgaggtggacgtc
acccccgtgcattcgacgcttcaggctgagcgcaaccccaccacaggagagctgctgggc
ttcagagaggcacttgtggacaacatgggcttgtcggccaaaaattctctttccttccaa
cgagcacccggccctccagtcgaggctctccgaggcagcgctaccaattaccccttctgg
ccaggtgggatggacgaacccagccttgaacagatcaagactcaagaagaccaggaagag
gacattgattttgagaacgatttgctgacggtcccaccaggctggaagaaaggggtggag
ttcaccagacaagagctcaaggcctccccagggttgctgaacttgacccacctgctgggg
gccctggacacctttgagctgggagcctccagcgacgaagaagggaaggagaaggccgag
gaagggaggaagaggacgaagaaggggaaaggggcgaagggagaggaggcgcccccggca
gaaccggcgccgctgcagagggcaaacagcctggaggagctggtgcttaaggaggtgacg
cccgcccctaaatcagccccacaggctgccccggcccctgctgcagcttccgagcccccc
aaagagcagtgggccatcccagtggacgtcagctctcccgtggacgacttctacaagcga
attcctgatccagctttcaagtggccttttgagccagacgttttccagaagcaggcgatt
ctccacttggagaagcacgactccgtgtttgtcgctgcccacacctctgccggaaagacc
gtggtggcggaatacgccattgctctgtcccagaagcacatgacacgcactatctacact
tccccaatcaaagctctttccaaccagaagtttcgggatttcaagaacacctttggggat
gtggggttgttgacaggggacgttcagctccatccggatgcctcatgcctcatcatgacg
actgagatccttcggtcaatgctctataacggctcggatgtcctcagagacttggagtgg
gtgatctttgatgaggtgcattacatcaacgactcagagcgtggggttgtctgggaggag
gttctcatcatgctgccagaccacgtgaacataattttgttgagtgccaccgttcccaac
accctggagtttgctgactggatagggaggatcaagaggaagaaaatctacgtgatcagc
accctgaagcgccccgtcccgctggaacattacctgtacacaggcaacagccagaaaacg
caaaacgagctcttcctgctggttgatgcccgcggcacgttcctgaccaaggggtattac
gatgctgtggatgccaagaaggagcgggccagcaagcattcccagaccttcggggccaag
cagcccatgcacccgggggctggggcaggccaggacaagaacatctggctctccctcatc
gacatgctgcgcaagaaggaccagctgcccgtggtggccttcaccttctcccgcaaccgc
tgcgacgacaacgcctccatgctcactaccgtcaacctgaccaccacgaatgagaagagt
gagatccacgtcttcttccagaagtgcatctcccgcctgaagggcacagaccgccagctg
cctcaggtccttcatatggtggatctcttgaagcgaggcattggggtgcaccacagcggc
atcctgcccatcctaaaggaagtggtggagatgctgttcagcaaaggccttgtcaagatc
ctcttcgccactgagactttcgccatgggagtgaacatgccggcaaggacagtggtcttt
gattcgatccgcaaacacgacggcacaaacttccgggatctggtgccagctgagtacatc
cagatggcaggccgagctggacgccgaggtctcgacaccacggggatggtgatcatcttg
tgcaaaaaccaagcgcctgagatggctgatcttcaccggatgatgttgggcaaacccacc
cagctgcagtcccagttccgcctcacctacaccatgatcctcaacctgctgagagtagaa
gcccttcgcgtggaggacatgatgaagaggagcttctccgagttccacacccggaaggac
agcaaggtccacgaacacaggattgcccagctgagctgcatcttggccaacatggaagca
tcagatctgtcgggacagcttggcgacttagaggagtattatcacgtggtccgagagcta
caggagacccgggaacttatacagaggcgagtcatggagtcaatgaacggactgaaggcc
ctttccgtgggacgggtgattgtggtgaaaaaccaagagcaccgaaatgccctgggggtg
atcttgcaggtttcctctgacgcggccaaccgagccttcagcactttggtgatgtgcgag
aaaaagctgtcagagggggacgcggctgcttgcaaggaggccggtctcccttcccctcca
gaggtacctcttcctgatgaccttctgcacaccaagctcttccttccagagggcccttgc
ggacatactataaagaaactgggcccatcagacattttcggtatcacaaacaaaactctg
cgggtcaatgctgagcgcatcctggaagatttcaagaagcgccagatgcccaggttcagg
aatgatccgcctgggccttcagctgccacagccacccaggagctgctgcgcttggccgag
ggctcccccgagggcctccccctcttggatcctgtgaacgaccttcagctgaaggacctg
gaagtggtggaaggggtggtgaaggcacgtcgcctggaggaagcgctgctggggttccag
tgcgtgcacagcccccatttccacacagagtttgtgcgattcagggagcgccagcaggtg
ttggaggagctggagcagctgcgcttcctgctctctgaccagtccctcctgctgctgcca
gaatatcaccagcgggtacaggtcctgcgctccctgggctacatcaacgaaggcggggcc
gtggagctgaaaggcagcgtggcccgccagatcagcaaccacgagctgctgctcacccag
ctgctgctggacaacgccctgacggacctgcggcccgaggagatcgtggccttgctcagc
tgcaccgtctgccaggtccgcaccagggtggagccccagctgccctccgtcctgcagaag
ggcatagagcacatccggtcggtggccgaggagatcgccctgctgcagcgcaagtgcggc
ctccaggagtcagtggaggactttgtggagcagtacaaatttgggctggtggaggtggtc
tacgaatgggcccgcggcatgccgtttgctgagatcgcccgcctgacagacgtgcaggaa
gggatcatcgtccgctgcatccagcgcctggacgagacctgccgagagatgcggaacgcg
gcccgcgtcaccggggagccgacgctccacgccaagatggaggccgcctccaacatgatc
aagagggacatcgtctttgctgccagcctctacacccagtga
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integrated database retrieval system
