Podarcis raffonei (Aeolian wall lizard): 128409820
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Entry
128409820 CDS
T09310
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf04382
Cornified envelope formation
praf04510
Focal adhesion
praf04512
ECM-receptor interaction
praf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128409820 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128409820 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128409820 (COL4A2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128409820 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
praf04147
]
128409820 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
praf00536
]
128409820 (COL4A2)
Exosome [BR:
praf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128409820 (COL4A2)
Glycosaminoglycan binding proteins [BR:
praf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128409820 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128409820
NCBI-ProteinID:
XP_053236218
LinkDB
All DBs
Position
3:587017..757207
Genome browser
AA seq
1718 aa
AA seq
DB search
MRRPPPLRVARPTGRVSQITLFLGLVVLLSGKVQAGGKSYTGPCAGRDCSWGCECFPEKG
ARGQPGLLGQQGFPGPPGVGGIPGLPGHKGYKGERGQPGITGPKGEAGQRGVTGFSGADG
IPGHPGQAGSRGKPGHDGCNGTKGDAGQQGGQGPGGLPGFFGIQGPKGQKGEPFVFTPEL
AVQFRGDTGDPGLRGFPGPQGAPGAVGIFGPVGNTGLPGPPGPPGSPGLQGNRGLGFYGE
KGDKGDIGPPGLPGRPSTGEFVTSTDVISSEYKGEKGIKGIRGEAGIPGHHALSAEKGEE
GITGFTGQRGLPGINGLTGTEGDVGFPGPDGFPGIPGQKGTKGEPGDKGAQGPPAYAPYP
KLIKGARGDWGLPGAPGPEGDRGEQGSPGSAGPQGSSDDNSVGRGLPGEMGPKGLTGDPG
FAAVYPGPPGLDGNPGLQGSPGVPGPPGSPDTSVAVKGLPGFPGPPGNQGYPGPRGQKGL
KGEPGDCKCAESTERKRGPAGQPGPPGFPGPMGPVGRKGDPGDQGPHGVPGFAGSKGLPG
VPGPPGQQGPKGDSRYVTTRGAKGDQGIPGIPGYKGEDGLPGRDGTDGLPGLPGLPGDGV
RGEPGDPGEPGPLGPKGFPGEEGLPGVGLPGPKGYPGPLGDPGVPGSPGFQGSPGPPGTP
AEIDCGQTVKVFFRGNRTEPIQSGTSCIQAPKGTPGTPGIPGPRGAKGTRGIAGELGLHG
SKGLKGSLGDQGREGLAGPQGFPGPRGNRGAPGLPGEQGFPGSPGLPGWPGPPGVKGVAG
DRIGAPTGPQGDAGPPGIPGLKGPPGDHGLPGLRGSDGIPGQPGAKGHPGSPGPAGLTGL
PGPQGPFGFPGLPGQQGITGRAGSPGFVGSPGARGDAGDPGKPGPVGMKGLAGDRGEPGF
IGTKGKAGEPGLPGVDGMHGLPGVKGAKGSSGIGGFKGAIGVRGWPGQNGIKGEPGFTGL
PGIRGLPGDSGLKGDRGDRGPPGSPPKIMPSMMLDVKGEKGNEGESGAQGSFGFKGTKGA
LGYPGQTGRPGSPGFPGYEKGQKGDYGIKGIKGISGYIGVSGGRGISGFPGATGRRGEKG
IPGIDGIFGESGQPGEIGDWGDIINLPGRAGSKGDAGITGAKGVEGAKGGKGDAGVPGFP
GIQGTRGSPGSPGLQGQRGFPGQVGEQGLSGDPGFPGSSGEKGSSGWIGLPGSKGAAGAR
GITGLHGLPSTKGFPGSPGPDGYGPPGFPGIWGDKGTVGEPSPIEGSRGAPGPKGERGDL
GQRGSPGSPGPEGRPGLPGVSNISGAPGDVGSPGLDGVPGYPGPPGPPGIAAPPGSKGEV
GQIGIIGEDGSKGLRGDHGADGRPGIPGFPGAKGYKGEQGVMGFVGILGTPGDFGPTGPK
GDRGFPGFQGPPGSPGLPPVLPKLVSEQGSPGAPGNRGLPGTLGEMGPQGPPGSPGSRGP
MGKQGLQGRGGIPAAPGFRGDQGRTGLQGPGGFEGAAGDPGTPGLPGMPGRSINMGYLLV
KHSQADQEPMCPVGMSKLWSGYSLLYFEGQDKAHNQDLGLAGSCLTRFSTMPFLYCNPGD
VCYYASRNDKSYWLSTTAPLPMMPVQEEEIRPYISRCSVCEAPAVAIAIHSQDVTIPHCP
EGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAQGTCHYFANKYS
FWLTTIDNQFQHSPSADTLKAGLIRTHISRCQVCMKNL
NT seq
5157 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgccccccgccgctgcgcgtcgcccgccccactggccgggtttcacaaatcacg
ctctttctgggattggtggtgctgcttagtggtaaggtgcaagctggagggaagtcttat
acaggaccttgtgcaggaagagactgcagttggggttgtgaatgtttcccagaaaaagga
gctcgtggccaaccaggacttcttgggcagcagggattcccaggaccgcctggagtggga
ggtatcccaggacttccagggcacaaaggatataaaggcgaaagaggccagccaggaata
actggaccaaagggagaagcgggacaaagaggggtcactggtttttctggtgcagatggc
attcctggtcatccgggtcaagcaggatcaaggggcaaaccaggccatgatggctgtaat
gggaccaagggggacgctggtcagcagggaggccagggacctggaggcttgcccggattc
tttggaatccaaggacccaaaggtcagaagggagagccctttgtttttactccggaatta
gccgtgcagttcaggggagacactggtgacccaggtttgaggggcttcccgggacctcag
ggtgctcctggtgcagtgggtatatttggtccagttggaaacacaggtctacctggacct
ccagggccaccaggatctccaggacttcagggcaacagaggccttggcttttatggagaa
aagggtgacaagggtgatattgggccccctggtctacctgggcgtccatcaacaggagag
tttgtcacttcaacagatgtaatttcaagtgaatataagggtgagaaaggaataaaagga
attaggggagaagctggaattccgggtcatcatgcactttcagcagaaaagggagaggaa
ggaataacaggctttacaggacaaagaggtttgccgggaatcaacggtctcactggaaca
gaaggggatgtgggtttcccaggacctgatggcttccctggcatacctggtcaaaaagga
actaagggagagccaggagacaaaggtgctcaaggaccaccagcttatgcaccatatccc
aaactaataaaaggtgcaagaggtgactggggactccctggtgctcctgggcccgagggt
gaccggggcgagcaaggcagtcctggaagtgctggtccacaaggatcatcagatgataac
tctgtgggaagaggtttgcctggagaaatgggccccaaaggcctgactggcgatccaggt
ttcgcagctgtttatccaggtcctccaggattagatggcaatcctggattacaaggatca
ccaggtgtccctggccctccaggaagtccagatacttctgttgcagtgaagggtcttcca
gggtttcctggtcctccaggaaaccaaggttacccaggaccacgagggcaaaaggggttg
aaaggagagccaggagattgtaaatgtgctgaaagtaccgaacgaaaaagaggccctgct
gggcaacctggtccaccaggatttccaggtccaatggggccggtggggagaaaaggagac
cctggtgatcaaggcccacatggagtgcctggctttgctggctcaaaaggattgcctggt
gtacctgggccacctggacaacaagggccaaaaggagattcgcgatacgttaccacaaga
ggtgctaaaggagaccaaggaattccagggattcctggatataaaggagaagatggtttg
ccaggaagagacggcacagatggtttaccaggactacctgggcttccgggtgatggtgta
cgaggtgaaccaggggatcctggtgaacctggtccgttaggcccaaagggttttcccgga
gaagaaggcttgccaggtgttggcttgccaggcccaaagggatatcctggccctctgggt
gaccctggggttcctgggagtcctggcttccaaggttccccaggacctccaggcactcct
gctgaaatagattgtggacagacagtcaaagtctttttcagaggtaacagaactgagcca
attcagtcaggaactagctgtattcaagcgccaaaaggaactccaggaactccagggatt
ccaggaccaagaggtgcgaaaggtacaagagggattgcaggcgaactcggtctgcatgga
tccaaagggctgaaaggctctctgggagatcaaggtcgtgagggcttagcaggcccacaa
ggatttcctgggcccagaggaaacagaggtgcaccaggattgcctggggagcagggcttt
cctgggagtccaggattgccaggttggccaggccctccaggagtgaaaggagttgcaggt
gaccgaattggagctcccacaggcccccaaggggatgctgggccaccgggaatcccagga
ctgaaaggccccccaggagatcacggcttgccaggactgagaggaagtgatggcattcca
ggtcagcctggagctaaagggcatcctgggtctcctggccctgctggcttgactggtttg
ccaggaccacaaggaccatttggattccctggactgccaggccagcaagggatcacgggc
agagctggctcaccagggtttgtaggctcaccgggtgccagaggagatgcaggagaccca
gggaaacctggtcctgtaggaatgaaaggtctggcaggtgacagaggtgaacctggtttc
attggaactaaaggcaaggctggtgagcctggtctccctggggtggatggaatgcacggt
cttccaggtgtgaaaggtgctaaaggttcctctggtattggaggcttcaaaggtgcgata
ggcgtcagagggtggccagggcagaacggaatcaaaggagagcctggcttcactggcttg
ccagggattcgaggtttacctggtgactcgggattgaaaggtgaccgtggtgaccgtggc
ccaccaggatcaccccctaaaatcatgccaagtatgatgcttgatgtgaaaggcgaaaag
ggaaatgaaggagaaagtggtgcccaagggagctttggtttcaaaggcacaaaaggagca
ctaggctaccccgggcagacaggaaggccaggttcacctggctttccaggttatgaaaaa
ggtcagaaaggtgactatggaattaaaggaataaaaggcatatcaggatatataggtgtc
tcaggaggtcgtggtatttctggtttccctggagcaacgggaaggaggggggaaaaggga
attccagggattgatggtatttttggcgaaagtggccagcctggggaaattggtgattgg
ggagatattataaacttgccaggaagagcaggttcgaaaggagatgctggcataactgga
gccaaaggggtagaaggagccaaaggaggaaaaggtgatgctggtgttccaggttttcct
ggcattcagggcacgaggggctccccaggctcccctggattgcaagggcaaagaggattc
ccagggcaggttggcgaacaaggtttatctggagatccaggatttcctggatcatcaggt
gaaaaaggaagttctgggtggattgggcttccaggaagtaaaggtgctgctggcgccaga
ggaatcactggattacatggtttgccaagtaccaagggctttccaggatcaccaggtcca
gatggatatggcccaccaggtttcccaggtatttggggtgacaaaggtaccgtgggagag
ccaagcccaattgaaggcagcagaggagctcctggtccgaaaggagaaagaggagatcta
ggacagagaggctcacccgggagccctggacctgagggaagaccaggccttcctggagtt
tcaaacatatctggagcacctggtgatgtgggatcaccaggtttggatggtgtgccaggc
tacccaggaccaccaggaccaccaggaatagctgctccacctggaagcaaaggagaagtg
gggcagatcggcataattggagaagatggttcaaaaggacttagaggagaccatggcgca
gatgggagacctggaattccagggttccctggggcaaaaggatataaaggggaacaagga
gtcatgggttttgttggcatattgggaacgcctggtgactttggccccactggacccaaa
ggagaccgaggatttcctggatttcagggacctccaggttcccctggactgcctcctgtc
cttcctaaactggtttcagaacaagggagcccaggtgctcctggaaacagagggcttcct
ggcacgttgggcgagatgggtcctcaaggcccaccaggatctccaggttctagaggcccc
atgggtaaacaaggactgcaaggaagagggggaatacctgcagctccaggcttcagaggt
gatcaagggagaacaggactgcagggcccagggggctttgaaggtgcagctggtgaccca
ggtactcctgggctgccaggtatgcccggccgcagcatcaatatgggatatcttttggtg
aagcacagccaggcggatcaagagcccatgtgtccagtgggtatgagcaaactctggagt
ggatacagcttgctctactttgaaggacaagataaggcacacaatcaggatctaggtcta
gctggttcatgtttgactcgattcagcactatgccttttctttactgcaatcctggggac
gtctgctattatgcaagtcgcaatgataagtcttattggctctcaacaacagcccctctt
ccaatgatgcctgtgcaagaagaagaaatccggccttatatcagccgttgctccgtctgt
gaagcgccggctgttgccattgccattcacagccaagatgtcactattccacactgtcct
gaaggatggcgcagcttgtggatcggctattccttcctcatgcacactgcagctggtgcc
gaaggtggtggacagtcactagtgtctccaggtagctgtttggaagacttccgagcaaca
ccattcatcgaatgcaacggtgctcagggaacctgccactactttgcaaacaaatacagt
ttctggcttaccaccattgacaatcaatttcaacactccccttcagcagatacactcaag
gctggactcatccgaacacacatcagccgatgccaagtgtgtatgaaaaatttgtaa
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integrated database retrieval system
