Podarcis raffonei (Aeolian wall lizard): 128409821 Help Entry 128409821         CDS       T09310                                  Symbol COL4A1 Name (RefSeq) collagen alpha-1(IV) chain   KO K06237   collagen type IV alpha Organism praf  Podarcis raffonei (Aeolian wall lizard) Pathway praf04382   Cornified envelope formation praf04510   Focal adhesion praf04512   ECM-receptor interaction praf04518   Integrin signaling praf04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:praf00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     128409821 (COL4A1)    04518 Integrin signaling     128409821 (COL4A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     128409821 (COL4A1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     128409821 (COL4A1)  09150 Organismal Systems   09158 Development and regeneration    04382 Cornified envelope formation     128409821 (COL4A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:praf04147]     128409821 (COL4A1)    00536 Glycosaminoglycan binding proteins [BR:praf00536]     128409821 (COL4A1) Exosome [BR:praf04147]  Exosomal proteins   Exosomal proteins of other cancer cells    128409821 (COL4A1) Glycosaminoglycan binding proteins [BR:praf00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    128409821 (COL4A1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  128409821 NCBI-ProteinID:  XP_053236221 LinkDB All DBs Position 3:complement(418049..586940) Genome browser AA seq 1683 aa AA seqDB search MGRPARDPPLALLLAALLLPLLLLERRWAAEAAAAACSGCGKCDCSGVKGQKGERGLQGL QGLVGFPGIQGPEGPPGPPGMKGDIGEPGLPGTKGTRGAPGPAGYPGNPGLPGIPGGDGP PGPSGIPGCNGTKGERGPLGPQGLPGLPGNLGPPGPPGIKGDPGEVIGLIPDGVLKGEKG FPGHPGLPGTPGSPGIAGPVGPPGPSGKPGSPGPPGPPGEKGHMGLSFQGPKGDKGERGA MGPPGPQGTAPQQQEKGTVVIRGETGAPGEKGDPGSPGSPGLSEKGQKGEPGKPGPRGRP GKDGENGEKGRTGETGPPGFPGLPGISGPKGDKGAAGPSGPPGIVIGIGDQEVIGEKGDS GPPGIPGQKGEPGQKGFPGLPGAPGLPGQPSPGIIGAPGFPGERGEKGDRGSPGSSLPGP KGRDGPPGLPGVPGLPGPPFATDGILECQPGQPGDPGPPGPRGQHGFLGERGEKGVKGDG CFTCDVPSLAGEPGPQGFPGEPGVAGPKGAKGDRGLSGFEGLPGMTGPPGVPGLAGSPGA KGEPGDVFFDSDLKGDKGDPGFPGPPGVPGREGRPGRDGLPGAPGLKGASGTIGLKGERG LPGISGFPGPRGERGFPGSPGVGPSGPPGDKGDKGLSGIPGTPGFPGPKGEAGRVISLPG SPGADGIPGPPGIQGIQGDKGDPGIPGTPGLPGEKGQTGPPGIGFPGSPGLPGFPGQSGP PGVTGEKGEPGSPGLPGAQGSHGQKGEPGLGLPGPKGFPGPQGRDGLPGSKGDRGLPGIP GEKGFPGVTGQPGSHGDPGPSGIPGLQGSPGLPGIGPPGPPGVPGQSGPPGPIGPPGSKG ERGYPGVPGLDMPGSKGDKGSQGSPGLPGLQGLPGLPGPQGQEGRPGAPGIKGEMGVMGT PGSQGPPGPSGSSGAPGEKGDRGFPGAVGLRGDPGSKGEKGEAGLRGEPGKMDHVDMESM KGQKGDKGSKGQLGPLGEKGTAGDPGTPGMPGKDGEPGLPGQTGPKGDQGPPGYQGEPGA PGQKGSMGEMGLPGPSGEKGVQGLPGEAGKHGLPGAKGVKGEKGQAGLPGIGFPGAPGEK GDPGKTGIPGVPGEKGERGVPGIPGIPGSPGAKGLPGLQGSPGIPGIPGEKGGKGLPGLD GFPGLKGEKGDLGPEGPPGAPGERGQPGHDGIPGSPGAKGDPGIPGRGLPGLPGAKGERG AKGDVGSPGSPGSPGIPGTKGEAGFPGPQGPSGQPGVPGLPGKIGEGPKGDRGPQGRPGL QGIPGPQGSPGAPGLQGVKGEKGNPGWPGTPGRPGLKGDQGQQGIPGNAGFPGAAGPKGD MGPSGIPGPQGPKGSSGVPGLKGEQGDQGFPGAKGFPGPPGPPGPFLLLKGEPGEPGPVG PVGPKGFPGPPGPKGQQGVTGPVGVTGLPGTPGFDGMPGQKGETGPAGPPGPRGFPGPPG PEGMPGSMGPPGSPSVAHGFLVTRHSQSTEEPTCPSGTRLMFHGYSLLYVQGNERAHGQD LGTAGSCLRKFSTMPFLFCNINSVCNFASRNDYSYWLSTPEPMPMSMAPITGDNIRPFIS RCAVCEASAMVMAVHSQTIQIPPCPEGWRSLWIGYSFVMHTSAGAEGSGQALASPGSCLE EFRSAPFIECHGKGTCNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLHSNVSRCQVCM RRT NT seq 5052 nt NT seq  +upstreamnt  +downstreamnt atgggccgccccgcgcgggatccgccgctcgcgctcctgctggctgcgctgctgctgccg ctgctcctcctcgagcggcgctgggcggccgaagcggctgcggcggcttgttctggctgt ggaaaatgtgactgtagtggagtaaaagggcaaaaaggtgaaagaggtttgcaaggttta caaggtttggttggatttcctggaatacaaggacctgaaggtccccccggccccccagga atgaagggtgatattggagaaccgggattaccaggaacaaaaggaacaagaggtgcacca ggtccagctggctacccaggaaatcctggccttcctggcatccctggaggagacggcccc ccagggccttctggtatcccaggatgcaatggaacaaagggtgaaagaggtcctcttggt ccccaaggtttacctggattacccggaaatctagggcctccaggacctccaggaataaag ggagacccaggagaagttattggactgatacctgacggtgtactaaaaggtgaaaaaggc tttcctggtcaccctggattaccgggaacacctggttcaccaggtattgcgggccctgtt ggaccacctggaccttctggaaaacctggttctccagggccaccaggccccccaggtgag aagggtcatatgggtttaagcttccaaggaccaaagggtgataagggtgaacggggtgcc atgggccctccaggtccccagggaactgctcctcaacagcaagagaaaggaaccgtagta atacgtggagagactggtgctcctggtgaaaagggtgaccctggatctccaggatcacca ggattaagtgagaaagggcagaaaggtgaacctggaaaacctggtccacggggaagacct ggaaaggatggagaaaatggagagaagggaagaactggagaaactggccccccgggattt ccaggactgcccggaataagtggtcctaaaggagataagggtgcagcaggtccttcagga cctccaggaatagttatagggattggagatcaagaagtaataggtgagaaaggcgactca ggtcctccaggaattcctggacaaaaaggtgaaccaggtcaaaaaggttttccaggtcta ccaggggcaccaggtctaccagggcaacccagtcctgggataataggggcacctggtttt ccgggcgagagaggagaaaagggtgaccgggggtctcctggatcttcattgcctgggcca aaaggaagagatggacctccaggacttcccggtgtaccagggcttccaggcccacctttt gcaacagatggaattctggagtgccaacctgggcagcctggtgatccaggccctcctggg cctcgtggccagcatggcttcttgggagaaaggggagaaaaaggggtaaaaggtgatggc tgttttacctgtgatgtacccagcctagctggtgagccaggcccccaggggtttccagga gaaccaggtgttgcaggaccaaagggtgctaaaggtgacaggggcctttctggatttgag ggtcttccaggaatgacaggacctccaggtgtacctggactggcaggaagcccaggagca aaaggggaacctggagatgttttttttgactctgatttaaaaggtgataaaggagatcca ggattccctggacctccaggtgttcctggaagagaaggaagaccagggcgggatggcctg ccaggtgccccaggtcttaaaggtgcatcgggaacaattgggttaaaaggagaacgtggc ctcccaggaataagtggttttccaggaccccgtggagagagaggttttcctggttcccca ggggtcgggccctctgggccacctggtgataaaggggacaaaggtctttcagggattccc ggcacaccaggatttccaggacccaaaggtgaagctggacgcgtcatttctctgcctggt tctccaggagcagatggtattcctggcccccctggaattcagggcatccaaggtgacaaa ggagatccagggatcccaggaacgcctggcctgcctggtgaaaaaggccagacaggtcca ccaggaatagggtttcctggctcgccagggctcccaggttttcctggtcagtcaggccca ccaggtgtaactggagaaaagggagaacccggttctccagggttaccaggtgcacaaggg tcacacggacaaaagggtgaacctggattaggtctcccaggccctaaaggttttcctggt ccacaaggacgagatggccttcctggatcaaaaggtgatcgaggcttacctggcatacca ggagaaaaaggatttccaggtgtgactggccagccaggatcccatggtgaccctggtcct tctggaataccaggtctacagggctcccccggtttaccaggaataggccctcctggccct cctggggttccaggacaatctggtcctccgggaccaataggacctccaggaagcaaaggg gaaagaggctacccgggtgttcctgggctagacatgccagggtccaaaggagataaaggt agccaaggatctccggggctgccaggattacaagggctgccaggcctgcctggcccacaa ggacaagaagggcgccctggtgccccaggaatcaaaggagaaatgggagttatgggcaca cctggaagccagggtcctcctggtccttcaggatcttctggagctccaggtgaaaaaggt gacaggggttttcctggagctgtggggctcagaggtgatcctggctcaaagggtgaaaag ggtgaagctggtctacgaggagaaccaggaaaaatggatcatgtagacatggaaagcatg aaaggccaaaaaggagataaaggaagtaaaggacaactgggacctttaggagagaaggga actgcaggggatcctggcacaccaggaatgccagggaaggatggggagcctggtctacct ggacaaacagggccaaaaggggaccaaggccctccaggataccagggtgaaccaggagct cctggacagaaggggtccatgggagaaatgggtctcccaggaccatcaggagaaaagggt gtgcaaggccttcctggtgaggcagggaaacatgggttacctggagcaaaaggtgtgaaa ggtgaaaaagggcaggctgggcttccaggaattggcttccccggggctcctggtgagaag ggagacccaggaaagacaggtattcctggcgtgcctggagagaaaggtgaaagaggtgtt ccaggaattccaggcatccctggctccccaggtgccaaagggctaccaggtcttcagggt tctccaggtattccaggaatcccaggtgaaaaaggtggaaagggattaccaggcttagat ggttttcctggcttaaaaggagaaaaaggtgaccttgggcctgaaggtcccccaggagct cctggagaaaggggccagccaggacacgatggaatcccaggctcacctggtgcaaagggt gacccaggtattcctggtagaggacttcctggacttccaggtgcaaagggagaacgaggt gcaaaaggagatgtgggctcccctggctccccaggaagcccagggattcctggtacaaag ggagaagcaggatttcctggccctcagggtccttcaggccaaccaggtgttcctggattg ccaggcaaaattggagagggacctaagggtgaccggggacctcaaggccgacctgggctt caaggaattcctgggccacaaggctctccaggtgctccaggattacaaggagtcaaagga gaaaaaggaaacccaggatggccaggaacaccaggaagacctggactcaaaggtgaccag gggcagcaaggaatccctggcaatgctggctttccaggagctgctggcccaaaaggtgac atggggccttctggaattccaggccctcaaggtccaaaaggttcttcaggtgttcctgga ctcaaaggagaacaaggtgaccaagggtttcccggagctaaaggttttccaggcccacca ggtcctccaggccccttcctactcttgaaaggtgaaccaggtgaacctggtcctgtaggc ccagtaggccctaagggatttcctggtcctccaggcccaaaaggccaacaaggtgtaacg ggacctgtgggtgtgactggtctcccaggcactccgggatttgatggaatgccaggtcag aaaggagaaactggtcctgctggtcctccaggtcctagaggctttcctggcccacctggt cctgaaggcatgccagggtcaatgggtccaccagggagtccctctgtagctcacggtttc cttgtgaccaggcacagccaaagcacagaggagccaacatgcccatctggaacaagactg atgttccacgggtattctttgctttatgtacaaggaaacgaacgggcccatggtcaggac ttgggcacagctgggagctgtctacgtaaattcagcacaatgcctttcctgttctgcaac attaacagtgtatgcaattttgcctcaaggaatgattattcttactggttatctacccct gagccaatgccaatgagtatggctcctattacaggagacaacatcaggcctttcatcagt cggtgtgctgtatgtgaagcttctgcaatggtgatggcagttcacagtcaaacaattcaa attccaccatgtccagaaggatggagatcactgtggataggctactcctttgtgatgcac accagtgctggtgcagaaggctcagggcaagctctggcatctccaggttcctgtctggaa gagttccgcagtgctcccttcatagaatgccacggcaagggcacctgcaattattatgca aatgcttacagcttctggcttgccactattgagagaaatgaaatgttcaagaaacctact ccttccacactaaaagcaggagatctacactcaaatgttagccgttgccaagtatgtatg agaagaacatga

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