Podarcis raffonei (Aeolian wall lizard): 128410239
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Entry
128410239 CDS
T09310
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf04510
Focal adhesion
praf04512
ECM-receptor interaction
praf04518
Integrin signaling
praf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128410239 (COL9A1)
04518 Integrin signaling
128410239 (COL9A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128410239 (COL9A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128410239 (COL9A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
praf00535
]
128410239 (COL9A1)
Proteoglycans [BR:
praf00535
]
Extracellular matrix (ECM) proteoglycans
Others
128410239 (COL9A1)
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Ortholog
Paralog
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Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
128410239
NCBI-ProteinID:
XP_053237215
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Position
3:complement(39216383..39309508)
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AA seq
951 aa
AA seq
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MNIPRKQNKTKQNKREGSAKQQDHRVSHRRDIGRRRQYQLFCYLCCFLGFLASATAQQQT
RFPLTFNSNTKTDLCPPTRFRQDDLPGYDLISQFQLDKAASRGIIQRVVGSTALQVAYKL
STNVDFRIPTRSLYPNGLPNEYSILTTFRMAGTTLQKYWSVWQVLDSSGKEQVGLKFNGQ
AKSLEYSYKGIDGSLQTATFLDLPYLFDSQWHKVMVGIERNAVTLYVDCTQIQTLAIKPR
GKINVDGFTTLGKLKDNPQISVPFEIQWMMIHCDPQRPQRETCGELTARSSISQTAVKRG
PPGPQGPPGPPGPPGVPGIDGIDGDRGPNGPVGPAGPDGEPGRPGVPGLPGIPGADGLTG
PDGSPGRAGPKGQKGEPGLPGGRGLPGKGIPGSLGPPGIAGLPGEVGRVGPPGDPGKRGP
PGVPGPPGPMGTVGLRDGDPLCPNSCPPGRSGYAGLMGMKGHKGVKGEAGEPGKQGHKGE
EGEQGGVGDVGTQGPPGPQGLRGITGIMGPKGDKGARGLDGDPGPRGLPGPPGDQGQRGS
LGEAGPKGERGPEGVRGISGLPGPKGESGLPGVDGREGIPAMPGSKGEPGKPGPPGDIGV
QGLPGLPGSPGAKGVAGPQGNAGPPGIPGLMGNSGKPGEQGPQGEKGPIGPRGPSGSRGE
LGPAGPPGPPGKMGGEGDIGLPGLPGPPGLPGAKGDRGLVGEPGPKGDQGAAGGEGEPGQ
RGDLGDMGLPGPKGSVGNPGEPGSRGPEGSRGLPGIEGLRGPPGPRGLQGQQGATGLPGS
QGPAGREPTDAHIKQVCMRVLQEQLAQLAASLRRPEFGAPGLPGRPGPPGSPGPPGDNGF
PGQLGLRGLPGLKGPPGDIGLKGPKGETGEKGERGFPGRGPKGLPGTTGLPGEPGKPSYG
TDGRDGDRGPPGAGGLPGIPGPPGPPGPPGYCEPSACTVQAGLRADNVKGP
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgaacattcccagaaagcaaaacaaaacaaaacaaaacaaaagggagggcagtgcaaag
cagcaagatcaccgcgtgagtcacaggcgcgatataggaaggagaaggcaataccaactt
ttctgttatttgtgctgttttcttgggtttctggcatccgctactgctcaacagcagaca
agatttccacttacattcaattccaacacaaagactgacctctgcccaccaactaggttt
cgccaagatgatctaccaggatatgacctgatttcacagttccaacttgataaagctgct
tccagaggcatcatccagcgtgtggtgggctccacagctttacaagtggcttacaagtta
agcacaaatgtagacttcaggatcccaactaggtctttgtatcctaatggattacctaat
gaatattccattctaacgacttttcgaatggctggaactactcttcagaagtattggagc
gtttggcaggttctagactcttctggaaaagagcaagttggattgaagtttaatgggcaa
gccaagtctcttgagtactcatataaagggattgatggaagtctccagacagcaacgttt
ctggatttgccgtatctctttgattcccagtggcataaggttatggttggcatagaaagg
aatgctgtcactctttatgttgactgtactcagatccagactttagccataaaaccaaga
ggaaagatcaacgttgatggctttaccacactgggaaaactgaaagataatcctcaaatt
tcagttccgtttgagatccagtggatgatgattcattgtgaccctcaacgaccccagaga
gaaacttgcggtgaacttacagctcggagttcgataagccagacagccgtcaagagaggc
cccccaggtccacaaggcccccctggcccgccaggccccccaggagttcctggcatcgac
ggcatcgacggggacagaggtcctaatgggcccgtgggccctgcgggcccagatggtgaa
ccaggtagaccaggtgtccctggattgccaggaatacctggggctgatggactgacaggc
cctgatggatccccaggccgtgctggtccaaaaggacaaaagggtgaacccgggttgcct
ggaggccgtggactgcctggtaaaggtattcctggatctctaggtcctcctggtattgca
ggacttcctggtgaagtgggcagagttgggccacctggtgatcctgggaagagaggccct
cctggagtgccaggcccccccggccccatgggaacagttggacttcgtgatggagatcca
ctgtgtcccaattcttgtccacctggccggtcaggatatgctgggctaatgggcatgaag
ggtcacaaaggagtaaaaggagaggctggtgaaccaggaaaacaaggccataagggcgag
gaaggtgaacaaggaggagtaggtgatgttggcactcaaggcccaccaggacctcaaggg
ttaagaggtataactggcataatgggacccaaaggtgacaagggtgctcggggtcttgat
ggtgatcctggtccccggggtcttcctgggcccccgggcgatcaaggacaaagaggttca
ttgggagaggcaggccccaaaggcgaaagaggtcctgaaggtgttagaggaattagtggt
cttcctgggcctaaaggagaaagtggcttaccgggagttgatggccgtgaagggatccct
gccatgccaggatcaaagggtgaaccaggaaaaccaggccctccaggtgatataggagtt
cagggactgccaggtttaccagggtctccaggagcaaaaggtgttgctggaccacagggt
aatgcaggtcctcctgggatacctggcttgatggggaattcgggtaaacctggagaacag
gggccacagggagaaaaagggcccatcggacccagaggcccatcgggtagcagaggtgag
ctgggtcctgctggccctccaggtccaccaggtaaaatgggtggcgaaggtgacataggc
ctcccaggtttacctgggcctccaggattgcctggtgctaaaggtgacaggggtttggtt
ggtgagccaggacctaaaggagatcaaggagctgctggtggagaaggggagcctggacaa
agaggcgatcttggcgacatgggtttgccaggccctaaaggatctgttgggaatcctggt
gaacctgggtcacgcgggcctgaaggaagtcgtggtttgcccgggatagaaggattacgt
gggccccctggacctcgtggtttgcaaggccaacaaggtgcaaccggcctgcctggcagc
cagggcccagctggcagagagccaaccgatgcacacattaagcaggtttgcatgagagtt
ctgcaagagcaactggctcaactggctgccagtcttcggaggccggagtttggcgctcca
ggcctcccaggccgtcctgggccaccgggttcccctgggccacctggagacaatggcttc
ccagggcagcttgggcttcggggactgcctggccttaagggtcctcctggagacattggg
ctgaaaggccccaaaggtgaaacaggtgaaaagggggagagaggattcccaggtcgggga
cccaaaggcttgccaggcacaacaggactcccaggagaaccaggcaaacccagctatgga
accgatgggcgagatggcgacagaggcccacctggagcaggtggcctaccgggcattcct
gggcctccgggaccccctggccctcctggttactgtgagccatcagcctgcactgtgcaa
gcaggactacgagcggacaatgtgaaagggccgtga
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