Podarcis raffonei (Aeolian wall lizard): 128410431
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Entry
128410431 CDS
T09310
Symbol
CDC40
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128410431 (CDC40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
praf03041
]
128410431 (CDC40)
Spliceosome [BR:
praf03041
]
Complex C
Other components
Step II factors
128410431 (CDC40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
ANAPC4_WD40
WD40_RFWD3
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
128410431
NCBI-ProteinID:
XP_053237632
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Position
3:53286172..53371952
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AA seq
589 aa
AA seq
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MVHFRSAKMSAAIAALASYGVSDSDSDSEAEGRPGHSAAPVADEDAVLHLASSAPAQQAL
LPVVDSAPAVAVKEDVETGVHLDPTTKEVQFNPTYDTMFAPEFGPVNPFRTQQMAAPRNM
LSGYTEPAHINDFMFEQQRRTFATYGYALDPSIDNYEVPTKYIGSVEEAEKNQGLTVFET
GQKKTEKRKKFKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQRELDEITAKRQKKGKHE
DDKPGEEKTILHVKDMYDYQGRSYLHVPQDVGVNLRSTVPPEKCYLPKKQIHVWSGHTKG
VSAVRLFPLSGHLLLSSSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNNAGTQFLSA
AYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEI
VQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLS
PNGKWLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDADG
KLNIWDWKTTKLYSRLKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggtccacttccgttctgctaagatgtcggccgccatagcagcgctcgcttcgtacggc
gtctcggactccgattccgactcggaagcggagggcaggcccggccactcggcggctccc
gtcgccgacgaggatgcggtgctgcacctcgcctcgtctgccccggcccagcaagcgctg
ctgcccgtcgtggactcggccccggcggtggctgtcaaggaagatgtggaaacgggagtt
caccttgacccaactacaaaggaagttcagttcaacccaacctatgataccatgtttgca
cctgagtttgggccggtgaatccatttaggactcagcagatggctgcacctaggaatatg
ctttctggatatacagaaccagcacacattaatgatttcatgtttgaacaacagagaaga
acatttgcaacctatggatatgctttggatccctcaatagataattatgaagttcctact
aaatatattggttctgttgaagaagctgaaaagaatcaaggtctgactgtgtttgaaaca
ggacaaaagaaaaccgagaaacggaagaaattcaaagagaatgatgcatctaacattgat
ggcttcttgggaccgtgggcaaaatatgttgatgaaaaggatgttgcaaaaccttcagaa
gaagaacagagggaactggatgaaataacagcaaagagacaaaagaaaggcaaacatgaa
gatgataagcctggagaagagaagactattttgcatgtcaaagacatgtacgactatcaa
gggagatcctatcttcatgttcctcaggatgttggggttaacctacgttcaacagtaccc
cctgagaaatgctaccttcctaagaaacagatccatgtatggtctggtcatacaaaggga
gtcagcgctgtcagactgtttcctctttctggccacttgctgttgtcttcttccatggac
tgtaaaattaagctctgggaagtatatggtgaacgaagatgcttaagaactttcattgga
cacagtaaagctgttagagatatatgctttaataatgctgggactcagtttctcagtgct
gcatatgatcggtatcttaaactctgggacacggagacaggacagtgtatttcaagattc
acaaacaggaaagttccctactgtgtcaaattcaatccagatgaagataagcaaaatctt
tttgtagcaggaatgtcagataagaaaattgtacagtgggatattcgaagtggagaaatt
gttcaggagtatgataggcatttaggtgctgttaacaccattgtttttgtggatgagaat
agaagatttgtgagtacatctgacgacaagagtttaagagtctgggaatgggacatacca
gtagatttcaaatacatagcagaaccaagtatgcactcaatgccagcagtgactttgtct
ccaaatgggaagtggctggcttgtcaatcgatggacaaccagattttgatttttggagcg
caaaacagattcaggctaaataaaaagaaaatattcaagggccatatggtggctgggtat
gcttgccaagtagatttttcacctgacatgagctatgttatatcaggtgatgcagatgga
aaactgaacatctgggactggaagacaacaaaactatacagtcgattaaaagcccatgac
aaagtctgtataggtgcagtttggcacccacatgagacatccaaggtaatcacttgtgga
tgggatggtcttattaagctgtgggactga
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