Podarcis raffonei (Aeolian wall lizard): 128410675
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Entry
128410675 CDS
T09310
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
praf03021
]
128410675 (SCAF8)
03041 Spliceosome [BR:
praf03041
]
128410675 (SCAF8)
Transcription machinery [BR:
praf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128410675 (SCAF8)
Spliceosome [BR:
praf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
128410675 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
Mucin
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
128410675
NCBI-ProteinID:
XP_053238200
LinkDB
All DBs
Position
3:69657997..69727636
Genome browser
AA seq
1324 aa
AA seq
DB search
MEAVKAFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLPGTTATMSNNTPGTPVTPATPANVVQSLPDPWV
SQITNTDTLTAVAQILQSPQGQQLQQLIQTLQMQQQKPQPSLLQALDAGLVVQLQALTAQ
LTAAAAAANTLNPLEQSVSFNKKLMDRFSDFGEEADINEEPKKETPTSQMPLVSESVNNS
LFHQLAEQLQQQNLEHLRQQLLEQPPKASPEETQEGNFGSEHSASPSQDSSHQQFLEVET
NLDNSMDVQQQDMDIDEGQEVVEQEVFEQEEKKPVVPSRSRTRSRSRSRSPRKRRSRSRS
GSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKIG
SKIIKIAWALNKGVKTEYKQFWDADVGVSYIPWEKVKLDDLDGFAEGGMIDQETVNSEWE
TARSSETTKEPVQTTQTTTVDKTTAVTTQTETYTQSVTMLQIPVAPSAPAVSLVPPTFPV
TMSVPPPGYSPIPPPPFMRASFNPSHPPPGYLPPPVPPPVPPPVVPTPLVQSSLPIAQES
MKDYSNLALPVGTVSSSLTTPTLSAGSAFTPLSSNKSDLDEKGSHLADLQISSSENRAVP
DDVSSSSGLTGGMQPPSVSTSSGLVGGIQPPSVSSSSGLVQPASVSSSSGHLTRVQPPNA
SNNSGLLTGVQPPSVSSSSGLLAGLQPMTVSSSSSLLMGLQPPIVSSNSGLLSGVQPPIV
SSSSGLLAALQPPIVSSNSGILGLPPPIVSSSSGLLGLPPPNISSGSGLLGLQPHAGIQN
VPHLTIASQRLPGMPLVDIRSGLMPQPPGPRFPLLQPGIPLQHSIPPPAILDPSLPPPRA
FLSGDLFTQTERPFGTSGRQSVDNMSNPDKRLALGDDSIQQEGDRDYRFPPVENRENINR
TSSVDMRDSVGRPPLDPRESLGRPPVDGREHLARPHIDLRENFGRPGMEGLGRRDHFAFN
SDKHWGQRGDFDEREHHSFPTFGGLKGFQEDRERYRQTNYRFENRSGPTWNRGLEQDTHR
DFDDRRRPWERQRDRDDRDFNFGREINGNRFGRERIQNNWIPPPHPRAFEFFEGGTSQQK
TDSVPQVNGENAETESQPPAAQVQGEPELYEKLATSSDTKKEKSDTEAELESEPVVESTE
TEGT
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaaagccttcaacagcgagctctactcgctgaatgactacaaacctcct
atttcaaaggctaaaatgacacagattactaaggcagcaatcaaggctataaagttctac
aagcatgttgtacaaagtgttgaaaaattcatacaaaagtgtaaaccagaatacaaggtg
cctggcttatatgtcattgactctattgtgcgacagtctcgacatcagtttggacaagaa
aaggatgtgttcgctcctaggtttagcaataacataattagcactttccagaatttatac
cgttgccctggggatgacaagagtaaaattgtgagagtgctaaatttgtggcagaagaat
aatgtgttcaaaagtgaaattatccagcctctattggatatggcagcgggaattcctcct
ccagtcgtgacccctgtcttgcctgggacaacggctactatgagtaacaatacaccagga
acgcctgtgacacctgctacaccagccaatgtggtccaaagtttgcctgatccttgggtg
tctcagataactaatacagatactcttactgctgtagcacagatcttgcagagtccacaa
ggccaacagcttcaacaactaatacagacactgcaaatgcaacagcagaaaccacagccg
tcattacttcaagcactggatgcgggtcttgtcgttcagttacaagccctcactgcacaa
cttacagctgctgccgctgctgccaatacacttaacccactagaacagagtgtctctttt
aacaagaagctgatggataggtttagcgattttggtgaagaagctgacattaatgaagaa
cctaaaaaagaaactccaacttcccaaatgcctcttgtatctgaatctgtgaacaactca
ctttttcaccaactagctgaacagttacagcaacaaaacctagaacatctccgccagcag
cttctggagcaacctccaaaggcaagtcctgaggaaacacaagaagggaattttggttct
gagcattcagcatcaccttcacaagacagcagccaccaacagtttttagaagtagaaaca
aatcttgacaattcaatggatgttcaacaacaggacatggacatagatgaaggtcaagaa
gttgtagaacaagaggtatttgagcaagaggaaaagaaacctgtagttccttcaagatca
agaacacgttcaagatcccgctcaaggtctccaagaaaaagaaggtccagatcacgatct
ggctctagaaagcgtaaacatagaaagcgttcgcgctctagatcaagggaaagaaagagg
aagtcctccaggtcctactcaagtgaaagaagagctagagagagggaaaaagaacgacag
aaaaaagggttgcctcctatacggtcaaaaacactaagtgtctgcagtactacactttgg
gttggtcaggtggacaagaaagccacccagcaagatttaaccaatttatttgaagaattt
ggacaaatagaatctataaatatgatccctcccaggggctgtgcgtatgtctgtatggtt
cataggcaagatgcctatcgtgctcttcagaaactaagctctggatcctacaagattgga
tctaaaattattaagattgcatgggctttaaacaaaggtgtgaaaactgaatacaaacaa
ttttgggatgcagatgttggagtttcatatataccttgggaaaaagttaaattggatgat
ttagatggctttgcagaaggaggcatgattgaccaggaaacagtaaatagtgaatgggaa
actgcaagaagctcagagaccacaaaagagcctgtgcaaacaacccagactacaacagtt
gacaagaccacagccgtaacaacccaaacagaaacttacacacagtctgtcactatgcta
cagattcctgtagctccatctgcgccagcagttagtttagtaccaccaacatttcctgtt
acaatgtctgtccctcctcctggctatagtccaattcctccacctcccttcatgagagca
agcttcaatccttcacacccacctcctggttatttgcctcccccagttccaccacctgtt
ccaccgccagtagttccaacccctcttgtacagtcttcgctaccaattgctcaagagtca
atgaaagattatagcaaccttgctctaccagttggcactgtttctagtagtcttaccacc
ccaacattatctgctggaagtgcttttactcctctgtcaagtaacaagtcagatttagat
gaaaagggatcccatcttgcagatcttcagatttcatcaagtgaaaacagagctgttcca
gatgatgtttcaagcagttctggacttactgggggaatgcagccaccaagtgtctcaacc
agttcggggcttgtagggggaatacagcctcctagtgtctcaagtagttctgggcttgtg
cagccagccagtgtgtcaagcagctctggacatttgacaagagttcagccacctaatgct
tcaaacaactctgggcttttgacgggtgtccagcctccaagtgtctccagcagctctgga
cttctggcaggactccagcccatgactgtctcaagcagctccagccttctcatgggactc
cagccacccatagtgtcaagtaactctggacttttgtcaggagtccagccacctatagtg
tcaagtagttctgggcttttggcagcactccaaccacctattgtctcaagcaactctggg
attctgggattgccaccaccgatagtctcaagtagttctggactattaggattaccacca
ccaaatatttcaagtggctctggacttttagggttacagccacatgctggaattcaaaat
gtaccccatttaactattgctagtcaaaggttgcctggaatgcctctagtagatatccgc
tcaggactaatgccacagccacctgggccacgatttcctctcctgcagcctggaatacca
ctacagcatagcattcctcctccagcaatcctcgacccatcccttcctccgcctagagct
ttcctttcaggagatttgtttactcaaacagagagaccatttggaacttccggtagacaa
agtgttgataacatgtcgaatccagataaaaggttggcacttggagatgacagcattcag
caagaaggagatagagactatcgctttcctccagtggaaaatagggagaacattaatcgg
acctcttcagtggatatgagggattcagttggaaggccaccactagatccaagagaaagt
ctaggaagacctccagtagatggaagagaacatcttgccaggccacacatagatttaaga
gagaactttggaagaccaggcatggaaggacttggtaggagagaccattttgctttcaat
tcagataagcactggggacaaagaggagattttgatgaaagagagcatcattcatttcct
acatttggtggtcttaaaggcttccaggaagaccgagaaaggtatcgtcaaacaaactac
agatttgaaaatcgaagtggcccaacttggaaccggggacttgaacaagacactcacaga
gactttgatgatcgccgaagaccttgggaaaggcagagggacagggatgacagagatttt
aattttggcagagaaattaatggaaacagatttgggagagagagaatacagaacaactgg
ataccccctccacatccaagagcatttgaattttttgaaggtggcacatctcaacaaaag
actgacagtgtgccccaagttaatggtgaaaatgcagagacagagagtcagccacctgca
gcgcaagtacagggtgaaccagaactttatgaaaagctggcaacttcaagtgacacaaaa
aaagagaagagtgacacagaagctgaattagaaagtgaaccagtggtagaaagcacagaa
actgaggggacataa
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