Podarcis raffonei (Aeolian wall lizard): 128410712
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Entry
128410712 CDS
T09310
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128410712 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
praf03019
]
128410712 (PNLDC1)
Enzymes [BR:
praf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
128410712 (PNLDC1)
Messenger RNA biogenesis [BR:
praf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
128410712 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
U9-ORF
Motif
Other DBs
NCBI-GeneID:
128410712
NCBI-ProteinID:
XP_053238283
LinkDB
All DBs
Position
3:71655044..71701747
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AA seq
584 aa
AA seq
DB search
MDVGAGEFEEKLPKLQELILGCDFVGLDMEFTGLHSTFPPSNQHSLFDSPAECYQKARQS
VQQFTVSQLGLSIFSNEKANKYVAHSYNFFLLPMTFGQMDSEVCFQTSSIQFLSRYGFDY
NKFLKDGIPYMNEAQEKKLQQQLLPGSLMVHSAFEKDKLKKVIDEVTCWVSSAEVKDSMV
LRDIYGFQVFEIQLILRRAIQDIWTIPLGGQKVMVKKMSPQHRWQLENTSYDSCRREQIL
FSARGFTNLFQTLVKAKKPLVGHNMLMDLLHLHENFYKPLPENYDEFKKNIHALFPVVMD
TKNIAKTTWKEFQFPRAKNLLELYKVLNGSDVNPTNQPCPEIFHASDCLRYATKESPHEA
AYDAFLCGSVLLKIAHLLLDRISCDPTRTAPSFSQYLDVLAACVNQVNVIRAGVQKINFS
GMDDPIKLPPLLIINVRGWPGVDEEQIYREFKIFCRFDVRRLKRNQFLLLSNNFKNVRMV
LREYKNHPNMQISPYHHWRHSPQNLWRCDLLVSAGILPWRTCQLCFISNHLLEAFLSAVC
PFLPHHHCKRYLQYIKIHCISLVVPNLCVVPNVGSAMEEQAIVK
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgggagccggggagtttgaggagaagttgccgaagctgcaggagctcatcctc
ggctgcgactttgtcggccttgacatggagttcacaggtttgcattctacctttccaccc
agtaatcagcacagcctctttgattcacctgctgagtgctatcaaaaagccagacagagt
gtccagcaatttacagtgagtcagcttggtttgtcaatattttccaatgaaaaagccaac
aagtacgtggctcattcctataacttttttctccttcccatgacatttggccaaatggat
tctgaggtctgtttccaaacatctagcattcagttcttgtctcgctatggttttgactac
aacaagtttcttaaagatggaatcccatacatgaatgaagcacaagagaagaaacttcag
caacaacttttgcccgggagcttgatggtccacagtgcctttgaaaaggacaagctgaaa
aaagtgattgatgaagtaacttgctgggtgtcatcagcagaagtgaaagattctatggtt
ctgcgcgatatatatggcttccaggtgtttgaaatacagctgattctaagacgagctatt
caagatatttggacgattcctttaggaggtcaaaaagtgatggtgaagaagatgagtcca
cagcatcgctggcagctggaaaatacttcttacgattcttgtcggagagagcaaattctg
ttctctgcaaggggtttcaccaaccttttccagacactagttaaagcaaagaagccactg
gtgggacacaatatgctgatggatcttctgcatctgcatgagaatttttacaagcccctc
cctgaaaactacgatgaatttaaaaagaacatacatgccctgtttcctgttgtcatggac
acaaagaacatagcaaagaccacctggaaggagttccagtttcctcgagctaaaaatctt
ttggagctttataaagttctgaacggcagtgacgtgaatcccacaaaccagccttgtcca
gagatctttcatgcaagcgactgcctcagatacgctacaaaagagtctcctcatgaggcg
gcctatgatgcatttctctgcggatcagttcttctgaaaatagcccatttgcttcttgac
agaatttcttgtgatccaacaaggactgctccctcgttttctcagtaccttgatgtattg
gctgcatgtgtgaatcaagtgaacgttatccgagctggtgttcagaaaataaatttttcc
ggtatggatgaccctataaagcttccaccgctccttatcattaatgtgcgaggatggcct
ggggttgatgaagagcagatctatcgggagtttaaaatcttctgcagatttgatgtgcgg
cggctaaagaggaaccagtttctcttactctccaataattttaaaaatgtcagaatggtt
ttgagagaatataaaaatcaccccaacatgcagatttccccataccaccactggaggcat
tctccacaaaatttgtggcgttgtgacctcttggtctctgctggcattcttccttggagg
acctgccaattatgcttcataagcaatcatctactggaagcatttttatctgctgtgtgt
ccttttcttcctcatcatcactgtaagcgatacttacaatatattaaaatacattgcatt
tctctagtagtcccaaacctatgtgtggttcctaatgtgggaagtgcgatggaagagcag
gccattgtcaagtag
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