Podarcis raffonei (Aeolian wall lizard): 128411332
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Entry
128411332 CDS
T09310
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
128411332 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
praf03400
]
128411332 (MSH6)
DNA repair and recombination proteins [BR:
praf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
128411332 (MSH6)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Plasmid_RAQPRD
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
128411332
NCBI-ProteinID:
XP_053239533
LinkDB
All DBs
Position
3:109194965..109216746
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AA seq
1329 aa
AA seq
DB search
MSRQSSLLSFFPMSEAKRDGDGGCSPHSDGEPEGGRMLSPRGSGIRGRTRAPPTDCDCEF
SPGDLVWAKLEGYPWWPCLVYKHPTEGSLFRGRGRSSRIHVQFFDDDPSRGWVSIRYIRP
YTGSSGRDTSRGGIFYSSRPEIRRAMELADAALQKEKSERLELAVCDKPSESEEEDDEEM
EVSDEGDDFGTSEEVKRRKRQIARKQHAEKSKKRKIMDSDSEREYSDMEFKPDEASSDEN
SVGVGDSDASESEADPGKKVKRPIKVSPKPVLEKASKPPQNNVSVTPSRETNLSAEIKYK
LSSFAAPECFDFQPSINGGGTGAGAGADGSPTSWEHDKIDWLQDGKRKDARRRRQNDPDY
DPNTLFVPEDYLRNCTPLMRKWWEMKSQNFESVLFYKVGKFYELFHMDAVIGVNKMGLSF
MKGTFAHSGFPEIAFDRYCTILVQKGYKVVRVEQIETPEMMEARCRALAHPTKYDRVVRR
EICRVISKGTQTYGILDSDDLDNYNKYLLCVKEKVDDSAGLQRTYGVCFVDTTVGKFYLG
QFSDDRHCSRFRTLLAHHIPVQILFERGNPSAETQKIFKGLLPSTVQEGLIAGSQFWDAS
KTLETLMEKGYFQDKENPSSEPIVPPVIKSMTAETDILGLTPGENAELALSALGCCVFYL
KKCIIDEELLSMGKFEEYIPVDVDIAKEQNLSSLFAKTSQRMVLDGVTLANLEILQNATT
GSEEGTLLENIDTCCTPFGRRLLKQWLCAPLCNPSTINNRLDAVEDLLAEAAKMSEIRDL
LRKLPDLERLLSKIHSIGSSLKNQDHPGNRAILYEEARYSKKKIVDFLSALEGFKIIMEI
ISILEDIADGFTSKTLRQIAMVKSKNPEGRFPDIKAELERWDAAFDHNVARKTGVVNPKT
GFDTQYDKALEDISSIEEGLRQYLEKQRKRLGIKAVMYWGAGKNRYQMEIAEGSVPASLP
DDYVLKSTRKGFKRYWTKDLEKMLNEIINAEERRDTAQKDCMKRLFYNFDKSSEDWHTAV
ECIAVLDVLMCFAHYSQGCDGPLCRPVIVLPDSNTLPFLELKHSRHPCITKTSSDDDFIP
NDILIGVQDEKANPESRTCCVLVTGPNMGGKSTLLRQTGLVVIMAQLGCFVPAESCRLTP
VDRIFTRLGASDRIMSGESTFFVELSETSSILRHATEHSLVLMDELGRGTATFDGTAIAS
AVVKELSENIKCRTMFSTHYHSLVEDYSHTPSVRLGHMACMVENETDDPSQETITFLYKF
IKGACPKSYGFNAARLANIPEEVIQKAQEKAKEFEATTLSLRLFRKQCQIAEGAPLARDE
LDKLAVLPV
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgccaaagctccctcctcagcttcttccccatgtcggaggccaagcgcgacggc
gacggcggctgcagcccccacagcgatggcgagcccgagggcgggcgcatgctgtcgccg
agagggtcgggcatccgagggaggaccagggcgccccccacggactgtgactgtgaattt
tcacccggtgatctggtttgggccaaactcgaaggctacccttggtggccatgccttgtg
tacaagcatccaacagaaggatcacttttcagaggcagaggaagatcctctcgcatccat
gtacagttttttgacgacgacccatcaaggggttgggttagcattagatatatacgacca
tatacaggttcttctggtagagataccagtaggggaggcatattctacagttcaagacct
gaaattagaagagcaatggaattggcagatgctgctttgcaaaaagagaagagtgagcga
cttgagctggcagtgtgtgacaaaccttcagaaagcgaggaagaagacgatgaggagatg
gaggtgagcgatgagggtgatgattttggcacatctgaggaagtgaaacgtagaaaaagg
caaattgcaagaaagcaacatgctgagaaatccaaaaagagaaagatcatggattccgac
agtgaacgcgagtattcagacatggagtttaaacctgatgaagctagcagtgatgaaaat
agcgttggagttggtgacagtgatgcttctgaatcggaggctgacccaggaaagaaagta
aagcgtcccattaaagtctcccctaaaccagtgctggaaaaggcatctaaacctccccag
aataatgtgtctgtaacgcctagcagagaaacaaatctttctgctgagataaagtataag
ttatcatcttttgcagctcctgaatgctttgattttcagccaagcattaacggaggagga
acaggagcaggagcaggagcagatggcagtccaacttcatgggaacatgataaaattgac
tggctccaggatggtaaaaggaaagatgctcgtaggagacggcaaaatgatccagattat
gatccaaatactctgtttgtgccagaggactaccttagaaactgcactccgttaatgcgg
aagtggtgggagatgaagagccagaattttgagagcgtgcttttctataaagttgggaag
ttctatgagctgttccacatggatgctgttattggtgttaacaagatgggcctgtcgttt
atgaaaggcacttttgctcactctggtttcccagaaatagcatttgacagatactgcact
atattagtccagaaaggttacaaagtggttcgtgttgagcagattgagactcctgagatg
atggaagcacgctgtagagccttggcccacccgacaaaatacgacagagttgtgcgccga
gaaatatgcagggttatttccaaggggacacagacctatggtattctagatagtgacgat
ttggacaactacaacaaatacctcctctgtgtgaaagaaaaagttgacgattctgctggc
cttcagcgtacctatggagtatgctttgttgacacgacagtggggaagttctacctgggt
cagttctcggatgaccgccactgctcaaggtttagaactctcttggctcatcatattcct
gtgcagatactttttgagcgagggaacccctctgcagaaacacagaagatattcaaaggc
ttacttccctctactgtgcaagaaggtttgattgctggctctcagttctgggatgcatcc
aaaacactagaaacattgatggaaaaaggctacttccaggacaaagaaaatccaagcagt
gaacccatcgtgccgccagtaatcaaatctatgactgcggaaactgacatactgggactt
acccctggggaaaatgctgagcttgcgctctctgctcttggctgctgtgtcttctacctt
aaaaaatgcattattgacgaggaactcttatcaatggggaaatttgaagaatacattcct
gtggatgttgatattgcaaaagaacaaaacttaagcagcctgtttgctaaaacaagccag
aggatggtgttggatggggtcaccctggcaaacctagaaattctgcagaatgcaaccact
gggtcagaagaaggcacattgctggaaaatattgacacttgttgtacgccctttggaagg
agactcctgaaacagtggctctgtgcaccgttgtgtaatccttccaccatcaataaccgc
ttggatgcagttgaagacctcctagctgaagctgccaaaatgtcagaaatccgtgacctt
ttaaggaaactcccagaccttgaaaggcttttaagcaaaattcacagtattgggtcatcc
cttaagaaccaggaccaccctggcaacagggctattttatatgaggaggccagatacagc
aagaaaaaaattgtagactttttgtccgcactggaaggttttaaaataattatggagatt
atctcaattttggaagatattgctgatggttttacatccaaaacactaaggcagatagca
atggtcaaatctaagaatccagaaggccgctttccagacattaaagcagaacttgaaagg
tgggatgcagctttcgatcataacgttgcacgaaagactggtgtggttaacccaaaaact
gggtttgacactcaatatgataaagcgctagaggatataagcagcattgaggaaggcctt
cgtcagtatttggaaaagcagcgcaaacggcttggcattaaagctgtgatgtattgggga
gcaggcaaaaaccgctaccagatggagattgcggagggttcggtgcctgcgagcctgcct
gacgattatgtgttgaaatctaccagaaagggctttaagcgctactggactaaagacctg
gagaaaatgctgaacgagatcatcaacgctgaagaacggagggatacggcacagaaagac
tgtatgaagaggttattttacaactttgataaaagcagcgaagactggcacacggcagtg
gaatgcattgcggttctagatgtcctaatgtgctttgcacactatagccagggatgtgat
ggaccgttgtgccgacctgtaattgtgcttccggatagcaacacgctgccctttttggag
ctgaagcattcccgccacccctgcattacaaaaacctcatcggacgatgacttcatccct
aacgatatcctcataggtgtacaggatgaaaaggcaaatccggagagcaggacttgctgt
gttctagtgactggtccaaacatgggaggaaagtccacactcctgagacagactggcctc
gtggtgatcatggcccagctgggatgctttgtacctgccgagtcttgcaggcttactcct
gtcgacagaatattcaccagactaggggcttcagatagaattatgtcaggggaaagtaca
ttctttgttgagctgagtgagacttccagcatactccgacatgcaacagagcactctctc
gttcttatggatgaactaggtcgaggtacagctacttttgatggaactgctattgctagt
gcagttgtcaaagaactttcagagaacatcaaatgccgcaccatgttttcaacacattac
cattctttagtagaggattattctcacaccccttctgtgcggttgggacacatggcatgt
atggtggaaaatgagactgacgatcctagccaagaaacaattacatttctctacaaattc
atcaaaggtgcttgccctaaaagctatggctttaatgcagcaaggcttgctaacattccc
gaagaagttattcagaaagctcaagaaaaggcaaaagagtttgaggcaactaccctctca
ctacgattgttcaggaaacagtgccagatagctgaaggagctccactagccagagatgag
cttgacaagctagccgtgcttcctgtgtga
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