Podarcis raffonei (Aeolian wall lizard): 128411333
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Entry
128411333 CDS
T09310
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
128411333 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
praf03400
]
128411333 (MSH2)
DNA repair and recombination proteins [BR:
praf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
128411333 (MSH2)
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_I
MutS_IV
AAA_27
MCU
Motif
Other DBs
NCBI-GeneID:
128411333
NCBI-ProteinID:
XP_053239535
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Position
3:108910352..108966952
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AA seq
952 aa
AA seq
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MASDFNAALAVSVDIAVGGSPSTSAREACWPDGANAESNFVRAILALPEKPDTTVRFFER
GDYYTVHGKDALLAAADVFKTRTVIRMLAQGNRKLESVALSKMNFESFLRNLLLIRRYRA
EVYKNKAGNKSTKEGEWYLAYKGSPGNLAHFEDVLFSNHNMSSSVGVVGIRVSSADGQKL
VGVGFVDTLVRKLEVCEFPDNDQFSNLEALLVQMGPKECILPVGEAAGEMEKLKEVVQRG
GILITERKKTEFVTKDIVQDLNRLLRSKGKEKMSSATLPEMDQKIAITSLAAVIKYLELL
TDESNFGQFELSTMNLHQYVTLDHSAVRALNLFQRSSENAQGTHCLAGLLNKCRTAQGQR
LVNQWIKQPLVDRNKIEERLNLVEAFVEEAELRQSLQEDVLRRFPDFNRIAKKFPKKATL
QDCYKIYQAVNQIPNVIEALDKVDENSKTLVQAVFTGPLRELLSDFSNFQNMIDETLDMN
TVESHEYLLKPSIEPSLIELRENMDKLEEKMQGVLKAAARELSLEAGKSIKLECNSQFGH
FFRITYKEEKVLRNNLKYKVLETQKNGVKFSNIQLKSINEEYISIRGEYEKSQAIVVKEI
IGVASGYKEPIQILSDVIAQLDAIVSFAHASNAAPTPYVRPTILEKGTGKIVLKASRHPC
IEVQDDVSFIPNDVTFEKGKQMFHIITGPNMGGKSTYIRQAGMIVLMAQIGCFVPCDSAE
ISIVDCILARVGAGDSQLKGVSTFMAEMLETSTILRIATENSLVIIDELGRGTSTYDGFG
LAWAISEYIASKIGAFCMFATHFHELTALADEIPTVNNLHVTALTTEDTLTMLYRVKNGP
CDQSFGIHVAELAAFPKHVIENAKTKALELGEFQTVGNPQAEEEEPPARNFYKEKQEGEK
IIKDFLSNVKALPLADMSEEDIRTKLKQLKDEVGAKNNSYVNEILSQTKLIA
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgacttcaacgcggccttggcggtctcggtggacatcgccgtcggcggctcc
ccctcgacttcggcgcgcgaggcgtgctggcccgatggggcgaacgccgagagcaacttc
gtgcgcgccatcctggcgctgccggagaagccggacaccaccgtgcgcttcttcgagcgc
ggcgactactatacggtgcatggaaaggacgcgctgctggccgccgccgacgtcttcaag
acgcggacggtcattcggatgctggcgcaaggaaaccggaaacttgaaagtgttgcgctt
agcaagatgaactttgaatcttttttgaggaatctgcttttgattcgtcgctacagggct
gaggtgtataagaataaggcgggaaataaatccaccaaggagggagagtggtatttggca
tataagggctctccggggaaccttgcccattttgaagacgttctgttttctaaccacaat
atgtcatcttctgttggtgttgtgggcattcgagtatcctcagctgatgggcaaaaactt
gttggagttgggtttgtggatacgttagtgaggaagctggaagtatgtgagtttccagat
aatgaccagttttcaaaccttgaagctctgctagttcagatgggccccaaggaatgtatt
ctacctgttggagaggctgctggagagatggaaaagctgaaagaggttgttcagagagga
gggattctgattacagagaggaaaaagactgagtttgtaacaaaggacattgttcaagat
ctcaaccgcttgctgagatcgaaagggaaagagaagatgtctagtgcaacattacccgaa
atggaccaaaagatcgccatcacttccttggctgcagtgattaagtatttagaactctta
acagacgagtctaattttggacaatttgaactctccaccatgaaccttcatcaatatgtc
acactggatcattccgctgtcagggcacttaaccttttccagcgttcttcagaaaatgct
caaggtacgcactgtttggctggcttgttaaataagtgcagaacggcccaaggacagagg
ttggtgaaccagtggatcaaacagcccctagtggacaggaacaaaatagaagaaaggcta
aacttggtggaggcctttgtggaagaagcagagctgaggcagtctcttcaagaagacgtg
ctccgtcgctttccggacttcaaccggatagcgaaaaaattccccaagaaagccacactc
caggactgttacaaaatataccaggctgttaatcagataccgaatgtgatagaagcactg
gacaaagttgacgaaaacagcaagacattagtacaagcagtgttcacaggacctctgagg
gagctgctgtctgacttctccaatttccaaaatatgattgatgaaactttggacatgaac
acggtggagagccacgaatacctcttgaaaccctccattgagccgagcctcattgagctg
agagagaatatggataagctagaggaaaaaatgcagggtgtgctgaaggcggcagcaagg
gaactaagtctggaagccggcaagagcatcaaattagaatgcaactcccagtttgggcat
tttttccgaatcacctacaaagaagagaaggtcctgcgaaacaacctgaagtataaggtc
ttggaaacccagaagaacggggtgaagttctctaacattcaactgaaaagcatcaatgaa
gaatacataagtatcagaggagagtatgaaaaaagccaggccatcgttgttaaggaaatc
attggcgttgcctcagggtataaggagcccatacagatcctgagtgatgtcatagcccag
ctggatgctattgtcagttttgctcatgcgtcaaatgcagcgccgaccccatacgtacgc
ccaacaattctggaaaaggggacagggaagattgtgctgaaagcctcaagacacccctgc
attgaagttcaagatgacgtttccttcatcccgaacgatgtgacctttgagaagggcaag
cagatgttccatatcattaccggtccaaacatgggagggaaatccacctacatccgccag
gcagggatgattgttctcatggcccagattggctgttttgtgccatgtgactctgcagag
ataagcattgtcgattgcatcctggctcgggtaggagctggagacagccagttgaaaggc
gtgtctaccttcatggcggaaatgttggagacgtctaccatccttaggattgcaacagaa
aactcattggtaatcattgacgagcttgggagaggaacatctacctatgatggatttgga
ttggcctgggcaatctcggaatatattgccagcaaaattggagcgttttgtatgtttgcc
actcattttcacgaactgactgcacttgctgacgagatccccaccgtgaataacttgcac
gtcacagcgctaaccacagaggacacgctgacaatgctgtatcgtgtgaaaaatgggcct
tgtgaccagagctttggcatccacgtggcagagctagctgcttttcccaagcatgtgata
gagaatgccaagacaaaggccttggagttgggggagttccagaccgttggaaatccacag
gccgaggaggaagagccaccagccaggaacttctacaaagagaagcaggaaggtgaaaaa
ataatcaaggatttcctttctaatgtgaaagcattgccactggcggacatgtctgaggag
gacatcagaaccaaactgaagcagctgaaagatgaagtcggggcaaaaaacaacagctat
gtgaacgaaatcctttcccaaacaaagctaattgcgtga
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