KEGG   Podarcis raffonei (Aeolian wall lizard): 128411333
Entry
128411333         CDS       T09310                                 
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
  KO
K08735  DNA mismatch repair protein MSH2
Organism
praf  Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:praf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    128411333 (MSH2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:praf03400]
    128411333 (MSH2)
DNA repair and recombination proteins [BR:praf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     128411333 (MSH2)
SSDB
Motif
Pfam: MutS_V MutS_III MutS_II MutS_I MutS_IV AAA_27 MCU
Other DBs
NCBI-GeneID: 128411333
NCBI-ProteinID: XP_053239535
LinkDB
Position
3:108910352..108966952
AA seq 952 aa
MASDFNAALAVSVDIAVGGSPSTSAREACWPDGANAESNFVRAILALPEKPDTTVRFFER
GDYYTVHGKDALLAAADVFKTRTVIRMLAQGNRKLESVALSKMNFESFLRNLLLIRRYRA
EVYKNKAGNKSTKEGEWYLAYKGSPGNLAHFEDVLFSNHNMSSSVGVVGIRVSSADGQKL
VGVGFVDTLVRKLEVCEFPDNDQFSNLEALLVQMGPKECILPVGEAAGEMEKLKEVVQRG
GILITERKKTEFVTKDIVQDLNRLLRSKGKEKMSSATLPEMDQKIAITSLAAVIKYLELL
TDESNFGQFELSTMNLHQYVTLDHSAVRALNLFQRSSENAQGTHCLAGLLNKCRTAQGQR
LVNQWIKQPLVDRNKIEERLNLVEAFVEEAELRQSLQEDVLRRFPDFNRIAKKFPKKATL
QDCYKIYQAVNQIPNVIEALDKVDENSKTLVQAVFTGPLRELLSDFSNFQNMIDETLDMN
TVESHEYLLKPSIEPSLIELRENMDKLEEKMQGVLKAAARELSLEAGKSIKLECNSQFGH
FFRITYKEEKVLRNNLKYKVLETQKNGVKFSNIQLKSINEEYISIRGEYEKSQAIVVKEI
IGVASGYKEPIQILSDVIAQLDAIVSFAHASNAAPTPYVRPTILEKGTGKIVLKASRHPC
IEVQDDVSFIPNDVTFEKGKQMFHIITGPNMGGKSTYIRQAGMIVLMAQIGCFVPCDSAE
ISIVDCILARVGAGDSQLKGVSTFMAEMLETSTILRIATENSLVIIDELGRGTSTYDGFG
LAWAISEYIASKIGAFCMFATHFHELTALADEIPTVNNLHVTALTTEDTLTMLYRVKNGP
CDQSFGIHVAELAAFPKHVIENAKTKALELGEFQTVGNPQAEEEEPPARNFYKEKQEGEK
IIKDFLSNVKALPLADMSEEDIRTKLKQLKDEVGAKNNSYVNEILSQTKLIA
NT seq 2859 nt   +upstreamnt  +downstreamnt
atggcgtccgacttcaacgcggccttggcggtctcggtggacatcgccgtcggcggctcc
ccctcgacttcggcgcgcgaggcgtgctggcccgatggggcgaacgccgagagcaacttc
gtgcgcgccatcctggcgctgccggagaagccggacaccaccgtgcgcttcttcgagcgc
ggcgactactatacggtgcatggaaaggacgcgctgctggccgccgccgacgtcttcaag
acgcggacggtcattcggatgctggcgcaaggaaaccggaaacttgaaagtgttgcgctt
agcaagatgaactttgaatcttttttgaggaatctgcttttgattcgtcgctacagggct
gaggtgtataagaataaggcgggaaataaatccaccaaggagggagagtggtatttggca
tataagggctctccggggaaccttgcccattttgaagacgttctgttttctaaccacaat
atgtcatcttctgttggtgttgtgggcattcgagtatcctcagctgatgggcaaaaactt
gttggagttgggtttgtggatacgttagtgaggaagctggaagtatgtgagtttccagat
aatgaccagttttcaaaccttgaagctctgctagttcagatgggccccaaggaatgtatt
ctacctgttggagaggctgctggagagatggaaaagctgaaagaggttgttcagagagga
gggattctgattacagagaggaaaaagactgagtttgtaacaaaggacattgttcaagat
ctcaaccgcttgctgagatcgaaagggaaagagaagatgtctagtgcaacattacccgaa
atggaccaaaagatcgccatcacttccttggctgcagtgattaagtatttagaactctta
acagacgagtctaattttggacaatttgaactctccaccatgaaccttcatcaatatgtc
acactggatcattccgctgtcagggcacttaaccttttccagcgttcttcagaaaatgct
caaggtacgcactgtttggctggcttgttaaataagtgcagaacggcccaaggacagagg
ttggtgaaccagtggatcaaacagcccctagtggacaggaacaaaatagaagaaaggcta
aacttggtggaggcctttgtggaagaagcagagctgaggcagtctcttcaagaagacgtg
ctccgtcgctttccggacttcaaccggatagcgaaaaaattccccaagaaagccacactc
caggactgttacaaaatataccaggctgttaatcagataccgaatgtgatagaagcactg
gacaaagttgacgaaaacagcaagacattagtacaagcagtgttcacaggacctctgagg
gagctgctgtctgacttctccaatttccaaaatatgattgatgaaactttggacatgaac
acggtggagagccacgaatacctcttgaaaccctccattgagccgagcctcattgagctg
agagagaatatggataagctagaggaaaaaatgcagggtgtgctgaaggcggcagcaagg
gaactaagtctggaagccggcaagagcatcaaattagaatgcaactcccagtttgggcat
tttttccgaatcacctacaaagaagagaaggtcctgcgaaacaacctgaagtataaggtc
ttggaaacccagaagaacggggtgaagttctctaacattcaactgaaaagcatcaatgaa
gaatacataagtatcagaggagagtatgaaaaaagccaggccatcgttgttaaggaaatc
attggcgttgcctcagggtataaggagcccatacagatcctgagtgatgtcatagcccag
ctggatgctattgtcagttttgctcatgcgtcaaatgcagcgccgaccccatacgtacgc
ccaacaattctggaaaaggggacagggaagattgtgctgaaagcctcaagacacccctgc
attgaagttcaagatgacgtttccttcatcccgaacgatgtgacctttgagaagggcaag
cagatgttccatatcattaccggtccaaacatgggagggaaatccacctacatccgccag
gcagggatgattgttctcatggcccagattggctgttttgtgccatgtgactctgcagag
ataagcattgtcgattgcatcctggctcgggtaggagctggagacagccagttgaaaggc
gtgtctaccttcatggcggaaatgttggagacgtctaccatccttaggattgcaacagaa
aactcattggtaatcattgacgagcttgggagaggaacatctacctatgatggatttgga
ttggcctgggcaatctcggaatatattgccagcaaaattggagcgttttgtatgtttgcc
actcattttcacgaactgactgcacttgctgacgagatccccaccgtgaataacttgcac
gtcacagcgctaaccacagaggacacgctgacaatgctgtatcgtgtgaaaaatgggcct
tgtgaccagagctttggcatccacgtggcagagctagctgcttttcccaagcatgtgata
gagaatgccaagacaaaggccttggagttgggggagttccagaccgttggaaatccacag
gccgaggaggaagagccaccagccaggaacttctacaaagagaagcaggaaggtgaaaaa
ataatcaaggatttcctttctaatgtgaaagcattgccactggcggacatgtctgaggag
gacatcagaaccaaactgaagcagctgaaagatgaagtcggggcaaaaaacaacagctat
gtgaacgaaatcctttcccaaacaaagctaattgcgtga

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