Podarcis raffonei (Aeolian wall lizard): 128411352
Help
Entry
128411352 CDS
T09310
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf04140
Autophagy - animal
praf04148
Efferocytosis
praf05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128411352 (VPS39)
04148 Efferocytosis
128411352 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
128411352 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
praf04131
]
128411352 (VPS39)
Membrane trafficking [BR:
praf04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
128411352 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Motif
Other DBs
NCBI-GeneID:
128411352
NCBI-ProteinID:
XP_053239609
LinkDB
All DBs
Position
1:complement(44725043..44754810)
Genome browser
AA seq
884 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKETGEVTTSESGCCNRF
EVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGATLFTC
DLKHSDTGEEVLRMCVAVKKKLQLYYWKDREFYELQGDFSVPDVPKSMAWCEDSICVGFK
RDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGTCTQKCALN
WTDIPIAMEHQPPYIVAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNIVYVASNHF
VWRLIPVSIATQIQQLLQDKQFELALQLADMKDDSDTEKRQQIHHIKNLYAFNLFCQKRF
DESMQVFAKLGTDPTHVMGLYPELLPSDYKKQLQYPNPVPVLSPAELEKAHLALIDYLTQ
KRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRL
ENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQY
LQHLGTDNLNLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRNKVLSFLIENFKNLAVP
YLEHIIQTWEEAGSEFHNCLIQLYCEKVQGLMKEYLSSFPPDKPPVAAGEEEGELGEYRQ
KLLFFLETSSCYNAEQLISDFPFDGLLEERALLLGRMGNHEQALFIYVHILKDTKMAENY
CHKHYDKSKDGSKDVYLSLLRMYLSPPSVHCLGPIKMKLLEPQANLQAALQVLELHHSKL
DTTKAINLLPANTQISEIRIFLEKVLEENAQKKRFSQVLKNLLHAEFLRVQEERILHQQV
KCIITEEKLCSVCKKKIGNSAFARYPNAIVVHYFCSKEVSAADT
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagccggtgccgattctggagaagctgcctctgcagatcgactgc
ttggccgcgtgggaggaatggctcctcgttgggacaaaacaaggccaccttcttctttac
agaattcgaaaggaaactggagaggttacgacatcagaaagtggctgttgcaacagattt
gaagtgacattagagaagtcaaacaagaacttctccaagaagattcagcagatccatgtt
gtgtcccaattcaaaattttggtcagtttattagaaaacaacatttacgttcatgacctg
ttgacatttcaacagatcacaacagtttccaaggcaaagggtgcaactctcttcacctgt
gacctgaagcactctgacacaggtgaagaggtcttgaggatgtgtgtggcagtgaaaaag
aagctccagctgtattactggaaggacagagagttctacgagctgcagggagacttcagc
gtgccagatgtacccaagtcaatggcatggtgtgaagattcaatctgtgtgggtttcaag
agggactattatctaataagggtggatggtaaaggttccatcaaagaactcttccccaca
ggaaagcagcttgagccactggtagcccctttggcagatgggaaagttgctgtaggccag
gacgatcttactgttgtattaaatgaagaaggaacttgtacacagaaatgtgccttgaac
tggacagatatcccaatagccatggaacatcaaccgccgtacattgtggcagtactgcca
agatatgtagagattcgtacttttgagccccgactcctcgtgcagagtattgagctccag
agaccacgcttcattacttctggaggtacaaatattgtgtatgtcgccagcaatcatttt
gtttggcgcctcattccggtttccattgcaacccagatccagcagcttcttcaagataag
caatttgaactggctctgcaattggcagatatgaaggatgactctgatactgaaaagcga
caacaaatccatcatattaagaatctgtatgccttcaaccttttctgccaaaagcgcttt
gatgaatcgatgcaagtctttgcaaagcttgggacagatcctacccatgtcatgggtctc
tatcccgaactgttgcccagtgattacaagaaacagctccagtatcccaaccctgttcca
gttctgtctccagcagagctggagaaagcacacttggcacttatagactacctaacacag
aaaagaagtcagttagtgaaaaagctgaatgactcagaccatcagtccagcacttctccc
ctcatggaggggactcccaccatcaaatcaaagaagaagctgctgcagatcattgatacc
actctgttgaaatgctacctccataccaatgtggccctagtggcaccactgttgcgactg
gagaacaatcactgccacatagaggaaagtgagcatgtgctcaagaaagctcacaaatac
agcgagctgatcatactgtatgagaagaaaggtctgcatgagaaagctttgcaggtgcta
gtggatcagtcaaagaaagctaactcccccttgaagggccatgagaggaccgtgcagtat
ttgcaacacttgggcacagacaacttgaacttaatattctcctattctgtttgggtactt
agagactttcctgaagatggattgaaaatatttacagaagatcttcctgaagtggaatcg
cttcctcgaaacaaagtcctcagtttcttgatagagaactttaaaaacctggctgttcca
tacttggaacatataatccaaacctgggaagaggctggttcagagttccacaactgcctg
attcagctctactgtgaaaaagtgcaaggattaatgaaggaatatctcagctcttttcct
ccagataaaccaccggtggcagctggagaagaggagggggaactcggagagtatcggcaa
aaacttcttttcttccttgagacttccagttgctacaatgctgagcagctcatcagtgac
ttcccctttgatggcctcctagaagaacgtgctctgctgctgggacggatgggaaatcat
gagcaagctctcttcatatatgttcacatcctgaaggatacaaaaatggctgaaaattac
tgtcacaaacactatgacaaaagcaaagatggcagcaaagatgtatacttgtctcttctc
cggatgtacctctcaccacctagtgttcactgcttgggaccaatcaagatgaaactattg
gagcctcaagccaatctccaggctgcattgcaggttttggaacttcatcacagcaagttg
gacactaccaaagcaataaacctcctcccagcaaatactcaaattagcgagattcgaatc
ttcctggaaaaagtccttgaagaaaatgcccagaagaaaagattcagtcaagtactaaaa
aaccttctccatgctgaattcctgagagtacaggaggaacggattttacaccagcaagtg
aaatgtataatcacagaggaaaaactttgcagtgtgtgtaaaaagaagattggaaatagt
gccttcgcccgctatcctaatgcaatagtcgtgcattatttctgttccaaagaagtgagt
gcagcagacacctga
DBGET
integrated database retrieval system
