Podarcis raffonei (Aeolian wall lizard): 128412003
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Entry
128412003 CDS
T09310
Symbol
PCDH20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
128412003 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
praf01009
]
128412003 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
praf04515
]
128412003 (PCDH20)
Protein phosphatases and associated proteins [BR:
praf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
128412003 (PCDH20)
Cell adhesion molecules [BR:
praf04515
]
Cadherins
Protocadherins
128412003 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
SGBP_BT4661-like
DC_STAMP
Motif
Other DBs
NCBI-GeneID:
128412003
NCBI-ProteinID:
XP_053240681
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All DBs
Position
4:104317814..104324542
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AA seq
957 aa
AA seq
DB search
MISRGNERRRSSPPALGSRWLPAKRHRPLAMGQRSSPGSSTSATQRNLPNLFIFLLFLGP
FNCFASYSRATELFYSINEGLPSGFLIGNLAQDLQVQATSEGEGEATVEGKQQPQQWGKT
PLSFSLASQGLGGQYVNLDNQTGELRTSAKEIDREALCTEDNVGSSVVASSSSSPVPSSE
SCLLLLDVMVLPQEYFRLVKVKIAIHDVNDNAPCFPMPQIHLFVPENSPVNTRLAIEHPA
VDPDMGSNGVQTYHLQDDFGVFTLDVEENESGERTPYLIVMGALDREARDKYITLITAED
GGVPPLVGSATLTIGISDINDNCPQFNETQINVTVFGNSSIGLPIASVHAVDVDQGINAE
ITYSYSQKVSQSSRTLFHLDESTGVIKLSKRINGDTPRLHRLSVLANGPGCIPAVITVLI
SIIKVTMRPPEVIPRFIANEVEGVVYLRELEPVNTPIAFFTIKDPDEKYKVDCYLDGDGP
FRLTPYKPYHNEYLLETTKPLDYEAQQFYEVSVIAWNTEGFHVNKIVKVQVLDDNDNSPV
FSQTLIELSIEENNVPNAFLTKLHATDADSGERGQVSYFLGPEAPSYFALDKVTGVLTVS
TQLDREEREKYRYTVKAVDSGVPARESIATVTISVLDKNDNSPRFINKDFSFFVPENFPG
FGEIGVISVTDADIGQNGWVALSVVNGSDIFVIDTGKGVLRAKVSLDREQQSSYILWVEA
VDGGDPALSSTAKITVLLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPITEVYAVDNDT
GMNAVIAYSIIGRRGPRPDSFKIDPKTGNITLEESLMQNDYGLYRLLVKVSDHGYPEPLH
STVMVNLFVNDTVSNESYIESLLRKEPDINVEEKEPQISIEPTHKRVESASCMPTLVVLS
VISLCSITLVTGMGIYICLRRGRKYHRGDETLEVQIPLNGRIDLHMLEKRPVEISNI
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgatcagccgagggaatgagaggcggcgcagctcgcccccggccctaggatcccgctgg
ctcccggcgaagaggcaccggccgctggctatggggcagcgatccagccctgggagcagc
acaagcgccacgcagaggaacctgccgaacttattcattttcctgctcttccttggacct
ttcaactgctttgcaagctatagtcgtgccactgaacttttctacagcatcaatgaaggg
ctgccctccgggttcctgatcgggaatctagcccaggatttacaggtccaggcaacatca
gagggagagggagaggccacagtagaggggaagcagcagcctcagcaatgggggaaaacc
cctctctccttcagccttgcctcccagggattaggaggtcagtatgtgaacctggacaac
cagactggagaactgcgcacctccgcaaaggagattgaccgggaggcgctctgcacagag
gataatgttggctctagtgtggttgcctcctcctcctcctccccagtaccatcttctgag
tcgtgcttgctcttgctggatgttatggtgttgcctcaggagtatttccgccttgtcaag
gtgaagattgccatccacgatgtcaatgacaatgccccgtgctttcccatgccacagatc
cacctctttgtgcctgagaactcaccagtcaacacccgtttagctatagagcatccggca
gttgacccagacatgggcagcaacggggtccagacataccacctgcaagatgactttggg
gtttttacattggatgtggaggaaaatgaaagtggggaaagaacgccttacctgattgtc
atgggtgccttggacagagaggccagagacaaatatattaccctcataactgcagaggat
ggaggagtgcctccactggtgggcagtgccaccctcactattggcatcagtgacatcaac
gacaactgcccacagttcaatgagacccagatcaatgtcacagtttttgggaattctagt
attgggttgcccatagcctctgtccatgctgtggatgtggatcagggaatcaatgcagag
atcacatattcctacagccagaaggtttctcagtcctcccgcactttgtttcatcttgat
gaaagcacaggtgttatcaagctctccaagaggattaatggtgacactcctcgtctccat
cggttgagcgtattagccaacggtcccggttgtatccctgcagtgatcactgtgttaata
tccatcatcaaagtcacaatgagacctcctgaagtgattcctcgttttatagctaatgaa
gtagaaggggtggtttacctgagggaattagagcctgttaacacaccgatagcatttttt
accataaaagatccagacgaaaaatacaaagtggattgctatttggatggtgacggccca
ttcaggttgacaccatacaaaccatatcacaatgagtacttgctggagactacaaaacca
ttggattatgaggctcaacagttctatgaagtatcagtgatcgcatggaatactgaagga
ttccatgtcaataaaatagtgaaagtgcaggttctggatgataatgacaattcacctgtt
ttttctcaaacactgatagaattatcaattgaagaaaataatgtccccaatgcttttttg
accaagctacatgcaacagatgctgacagtggagaaagagggcaggtgtcttatttccta
gggcctgaagccccttcatattttgctttagataaagtcacaggagttttgacagtttcc
acccagctggacagagaagagagagaaaaataccgctacacagttaaagcagtagattct
ggagtaccagcccgagaatcaatagccacagttaccatctctgtactggataaaaatgac
aacagtccaagatttatcaacaaggattttagtttttttgtgccagagaattttccaggc
tttggggaaattggagttataagtgtcactgatgcagatatagggcagaatggctgggta
gcactttctgttgtaaatggaagtgacatctttgttatagacactggcaaaggagtgcta
agagctaaggtctctctagacagggaacagcagagctcatacatcttatgggttgaagca
gttgatggaggtgatccggccttgtcctcgactgcaaaaataactgtccttttgctggac
atcaatgataacccacccttggtcttgtttccgcagtccaacatgtcttacctcctagtc
ctcccttctactctacctggctctcctatcacagaagtttatgctgtagataatgatacc
ggcatgaatgcagtcatagcatacagcatcatagggagaagaggtccccggccagactcc
tttaagattgaccccaagacaggcaacatcacgctggaggagtcactaatgcaaaacgac
tatggcctttatcggcttcttgttaaggttagtgatcatggttacccagaacctctgcat
tcaacagttatggtgaatctctttgtcaatgacactgtgagcaacgagagctatattgaa
agccttttaagaaaggaacctgatattaacgtcgaggaaaaagaaccacaaatctctata
gaacccacacacaaaagagtagaatcagcatcttgcatgcctaccttagtggtcctgtca
gtgataagcttgtgttcaataacattggtaactgggatgggtatttacatctgcctaagg
agaggaagaaagtaccacagaggagacgaaactttggaagtacaaatcccattaaatgga
agaattgatcttcatatgctggagaaaaggcctgtggaaatttccaatatctga
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