Podarcis raffonei (Aeolian wall lizard): 128412500
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Entry
128412500 CDS
T09310
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128412500 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
praf03021
]
128412500 (PCF11)
03019 Messenger RNA biogenesis [BR:
praf03019
]
128412500 (PCF11)
Transcription machinery [BR:
praf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128412500 (PCF11)
Messenger RNA biogenesis [BR:
praf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
128412500 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
CID
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
VHS
SHOCT
Motif
Other DBs
NCBI-GeneID:
128412500
NCBI-ProteinID:
XP_053241445
LinkDB
All DBs
Position
4:13827886..13849196
Genome browser
AA seq
1745 aa
AA seq
DB search
MSGGGGSSSSSSSSSSSAASEGPVGGGGGGSSGEDACRDYQSSLEDLTFNSKPHINMLTI
LAEENVQHAKDIVSLIEAQVAKAPSNEKLPVMYLMDSIVKNVGREYLAAFTKNLVATFVN
VFEKVDENTRKSLFKLRSTWDEIFPLKKLYALDVRVNSVDPAWPIKPLPPNVNTSSIHVN
PKFLNKSPEEPPAPSPAVCPPPVSCSAVSSTPVVPEIQKNLTQEQLIRQQLLAKQKQLLE
LQQKKLELELEQTKAQLAVSLSGQQSGSSLSQASVKPHVPQPSHMPVKAPHQVCLPPEKS
RLSPLHDVKTANRDPRLNRTSQHSSHSKDQSHRKDFTVSPVNQADPKVSKTLQAEKQSTS
KQERQKQNEKSQKKEFDQFDSKLKSPSPLQNKLLHAKDTRNQESENTRVSEISKRDPRLK
KHLLEKPDGKDDDLKEKRRCMERKDKEEHRPVSGRTKIINGIVQKQDPNTEESEKQVGKL
GRSGTRKRSRSPRSRSPSSHSPKRRDRRSPKRRLRSLSPGPKTAKSRVSGPKQSHAEDFG
QGIREERSSNKRKQEVRDSRRPKKTHEDRPQEGMNLHSSKANSEPKENVENWSSSKSNKR
WKSGWQENKNPQPTEEHQGLSKSPHQRHRDTWATSSKGVTSPRTPKQQHRLSVDANLQIP
KELDLANKRELLKKANEQLSSGEITQDEFLVLCHQIRQIIQYQEGKHRCNVWDSPTGEKG
ISKKKPLLSDADLIYHEHKAKLKRTQVQHSFPRLNMMDPEDILLERHLNETFLSGMDCEQ
TKSKSGSQFSERSRRHSPVGSNRPYSENSPHDSRRRHDESSSSKGIRDERRSPFNEHYKR
ARYEEPEKQFTENTGSRFGVSDGKQRFSSLMEERSHFEGSPRHPGTRASGDGQGTHFEGL
ANASSRIEGPQPQTTLRFEGSLGQPASQFEGPPGQSGGKSSLFDGPAQMGGGPLRFEGPS
GQVGAGTAIRFENPMGQPGGALRFEGPAGQSMSGIRFEGNHGQPSGGIRFEGPHGQPSAG
IRFEGPHGQSSGIRFEGPHDQPSGTMRFDGQPSGGMRFEGPHGQPSSGIRFEGPHDRPVG
PHGPPGGGMRFEGPHGQPMGPHGQPAAGMRFEGPHMQPMGPLGQPGGNLRFEGPHGQPMG
PHGQPARFEGPHGQPMGPHGQPLGPHGQPGVGPRFEGPHGQSGIGPRFDGPSGQAGGGLR
FEGPINQTGPRFDGCHSRFDGQPGQPSLMQRMDGLHVQPGPRFEMGPAQQTQPRFDGPPG
QQIPPRFDAPIPQRFEDPKHQQATRFDIPLGHQGQRMENVANHPASRLETPPYGQTGPYN
EPPNQPPYNAPSQGMQFQRTEQIFDNPQGPNFNGPPGSGAQNFPNTINRAPGPYYDDKNL
QYGNFSGMTGNVQQPQQVPVMSVASTQPVPYNPGQPLLAAHAQNPGSFVQNQPGQYLKGN
APLSYPDNHLGQLDVNELFSKLLSTGILKVLQTDSTSAQVSEVSAQPAPEEDEEDQDQTE
DQDVPDLTNFVIEELKQRYDSIINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRT
EKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQS
VPAGPAGADESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPSCYEDYQNTSSFDST
PSPSKTPVENPLNIMLNIVKQEVQDSCNSPKVKEEPEDTPADDCMEGSSPTLAEIKTEPE
KVESV
NT seq
5238 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcggcggctccagtagcagcagctccagcagcagctccagcgcggcctcg
gaggggcccgtgggcggcggcggcggcggcagcagcggggaagacgcctgccgcgactac
cagtcttcgctcgaggacctgaccttcaacagcaagccgcacatcaacatgctgaccatc
ctggccgaggagaacgtgcaacacgccaaggacatcgtctcgctgatcgaggcgcaagtc
gccaaggctccttctaatgagaaacttcctgttatgtaccttatggactccattgtcaag
aatgttgggagagaatatcttgctgcgtttactaaaaacctagttgcaacatttgttaat
gtgtttgaaaaggtggatgaaaatactaggaaaagtttatttaaattgcgttccacgtgg
gatgaaattttccctttgaagaaactctatgcccttgatgtccgggtgaattcagtagac
cctgcttggccaattaaaccgctaccccctaatgtgaatacttctagcatccatgtgaat
cctaagtttttaaataaatcgcctgaggaaccacctgcacctagccctgcagtctgtcct
cctcctgtgtcctgttctgctgtgtcctctactccagttgttcctgaaatacaaaagaat
ttgactcaagagcagctaataagacaacagctactagcaaaacaaaaacagttgttagaa
cttcaacagaaaaaattagaactggaactagagcagactaaagcacagctggcggtttct
cttagtggtcagcaaagtggatccagcttgagtcaagcatctgtgaagccacatgttcca
caaccatctcacatgccagttaaagctcctcatcaagtttgtctgccacctgaaaaaagc
cgtctctctccactccatgatgtcaaaacggccaacagagatcctcgtcttaatagaaca
agtcaacattcttcccattctaaagatcaaagtcataggaaagattttacagttagtcca
gtcaatcaggctgatccaaaggtcagcaaaacactacaggctgaaaaacaaagtacatca
aagcaagaaagacaaaaacagaatgagaaatctcaaaagaaagagtttgatcaatttgat
tcaaaattgaagtctccatctcccttgcagaacaagctgcttcatgctaaagatactaga
aaccaagaaagtgagaacaccagggtatctgaaataagcaagagagatccaagattgaaa
aaacatcttctagagaagccagatggtaaagatgatgatctgaaagaaaagaggagatgt
atggagagaaaagacaaagaagagcatagaccagtcagtggtagaaccaaaataattaat
ggcattgtccaaaagcaagatcccaatactgaagagtcagagaaacaggttggaaagcta
ggaaggtcgggtaccaggaaaaggtcacgttcccctagatctcggtcaccatcttcccat
tctccaaaacgaagagacaggaggtcacccaaaagacggctcagaagtctctctcctgga
cctaaaactgcaaagtctcgtgtgtcgggaccaaagcaatcccacgcagaggactttggg
cagggaatacgggaagaaaggagctctaacaaaaggaagcaggaagtgagagattcaagg
aggccgaagaaaactcatgaagaccgaccgcaggaaggaatgaacttgcattcttcaaaa
gcaaactcggaacctaaggagaatgtggagaactggtcaagttccaagtcaaataaaagg
tggaaatctggttggcaagaaaataaaaacccccagccaactgaagaacaccaaggactt
tctaaatcacctcatcagaggcacagggacacctgggcaaccagtagtaaaggagttaca
tcacctcgcacaccaaagcagcaacatagattaagtgtggatgcgaatttgcagattccg
aaagaactggacttggcgaacaagagagagttacttaagaaggctaatgaacaactgtca
tctggagaaataacacaagatgagtttcttgttctgtgccatcagattcgccaaattatc
cagtatcaggaaggaaaacacaggtgcaatgtttgggatagtcccacaggtgaaaaggga
atttcgaaaaagaagcccctgttgtctgatgcggatttaatatatcatgaacataaagct
aagctaaaaagaacgcaagttcagcattcgtttccgagactcaacatgatggatcctgaa
gatattttactcgagagacacttgaatgagacatttctttctggaatggattgcgaacaa
acaaaaagcaaatcggggagtcagttcagtgaaagatcaaggcggcattcccctgttggt
agtaacagaccatattctgaaaattcacctcatgacagccggagaagacacgatgagtcc
agctcctccaaaggtattcgagatgagcggaggtctccgttcaatgaacattataagaga
gcaagatacgaagaaccagagaaacaatttactgagaatacaggatcacgatttggggtt
tcggatgggaagcaaagatttagttcactgatggaggaaagatctcattttgagggctcc
cctagacatcctggaacaagggcaagtggagatggacaaggaactcactttgaagggctg
gctaatgcaagttctagaattgaaggaccacaaccacagactactttaaggtttgagggg
tccctaggccagccagcatctcagtttgaagggcccccaggacaatctggaggaaaaagt
tctctgttcgatggaccagcacagatgggtggtggtcccttgagatttgaagggccctca
gggcaagttggtgcagggactgctatacggtttgagaatcctatgggacagccaggggga
gcattgagatttgaggggcccgcaggccagtcaatgagtggtataagatttgaagggaac
catggtcagccctcaggtgggataaggtttgaaggacctcatggtcagccatctgctggg
attaggtttgagggaccacatggtcagtcatctgggatcaggttcgaggggccacacgat
cagccttcaggtactatgaggtttgatggccagccttctggtggaatgaggtttgaaggt
ccacatggccaaccttcaagtgggataaggtttgaagggcctcatgaccgtcctgtgggg
cctcatggtcccccaggaggtggaatgaggtttgaaggcccccatggccaacctatgggg
cctcatggtcagccagcggctggcatgcgatttgaaggacctcatatgcagccgatggga
cctcttggccagccaggaggcaatttgcgctttgaaggtccacatggacagcctatgggt
ccgcatgggcagccagcaagatttgaaggtcctcatggacagcctatggggccacatggg
cagcctttagggccacatggtcaaccaggtgttggtcccagatttgaggggcctcatggt
cagtctgggattggtcccaggtttgacgggccttcaggccaggctggaggtggacttagg
tttgaaggacctattaaccaaacagggccaaggtttgatggctgtcattcaagatttgat
ggtcaacctggtcagccatcacttatgcaaagaatggatggattacatgtgcaacctggt
ccaaggtttgaaatgggccctgctcagcagacacaacctcggtttgatggtcctccgggt
cagcagatacccccaagatttgatgcaccaatacctcaacggtttgaagatcctaaacac
cagcaggcaacacgatttgatattcctcttggtcatcaaggtcaaagaatggaaaatgta
gctaatcatcctgcctcaagacttgaaacaccaccttatggacaaactggcccttacaat
gaacctcccaatcagccaccctataatgcgccatcacaaggaatgcaattccagagaact
gagcaaatatttgataacccgcaaggaccaaacttcaatgggccacctggttctggagca
cagaactttcctaacactattaacagggcacctggaccttactatgatgacaagaatctt
cagtatggaaacttcagtggtatgacgggaaatgttcagcagcctcagcaggttcctgtt
atgtcggtagcatctactcaacctgtaccttacaatccagggcagcctctcttagcagct
catgcacaaaatcctggaagctttgtccaaaatcaaccaggtcagtatttaaaggggaac
gctccactttcctatcctgataatcatcttggacaacttgatgtaaatgaattattctca
aaactactttctacagggattctcaaagttttacagactgattcaacttcagctcaagtc
agtgaagtttctgcccaaccagctccagaggaggatgaggaggatcaagaccagactgag
gatcaagatgtcccagacctaactaacttcgttatagaagaactaaaacagcgatacgat
agcattataaaccggctctatactggcattcagtgttactcttgtggaatgaggttcaca
acttcacagacagatgtatatgcagaccatttggattggcactatcgtcagaaccgcacg
gaaaaggacgtcagccggaaagtcactcaccgaagatggtactacagcttaacggactgg
atagagttcgaagaaatagctgatttagaggaacgtgcaaagagccagttctttgagaaa
gtgcatgaagaagttgtgttgaaaacacaagaagctgctaaggagaaggagtttcagagt
gtccctgctggcccagctggagcagatgagagctgtgaaatctgccaggagcaatttgag
caatattgggatgaggaagaggaggagtggcacctaaaaaatgccattcgagtagacgag
aagatataccatccgtcatgctacgaagattatcaaaatacctcgtcatttgattcaacg
ccatctcctagcaagacacctgtagagaacccgctaaatattatgttgaatattgttaag
caagaagtacaggactcctgtaacagtcccaaggtaaaagaagagcctgaggatacgcct
gctgatgattgtatggaggggagctcacccacattggccgaaattaaaacagagcctgaa
aaggttgagtcagtttaa
DBGET
integrated database retrieval system
