Podarcis raffonei (Aeolian wall lizard): 128413086
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Entry
128413086 CDS
T09310
Symbol
DDX3X
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
128413086 (DDX3X)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
praf03019
]
128413086 (DDX3X)
03041 Spliceosome [BR:
praf03041
]
128413086 (DDX3X)
03036 Chromosome and associated proteins [BR:
praf03036
]
128413086 (DDX3X)
Enzymes [BR:
praf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128413086 (DDX3X)
Messenger RNA biogenesis [BR:
praf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
128413086 (DDX3X)
mRNA cycle factors
Common to processing body (P body) and stress granule
128413086 (DDX3X)
Spliceosome [BR:
praf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
128413086 (DDX3X)
Chromosome and associated proteins [BR:
praf03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
128413086 (DDX3X)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
128413086
NCBI-ProteinID:
XP_053242872
LinkDB
All DBs
Position
4:complement(59513024..59533042)
Genome browser
AA seq
751 aa
AA seq
DB search
MSHVAVENALGLDQQFAGLDLNSSDDQSGGGTASKGRYIPPHLRNREASKQAGNAYNYAA
NYYSNSMPPRSYSPSWDSRGGNGYMNGYDRDSRMNGYDRDRGVFGSRGGSGRDDRGFDGG
WNAGRDRDAAYSSFGARSDRGSGKSSFFAERGNGSRGRFDDRGGRGGEFDGISSRGGDRS
AFGGRFDRGGNSRWSDKSDEDDWSKPLAPSERVEQELFAGGNTGINFEKYDDIPVEATGN
NCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKYAIPIIKDKRDLMACAQTGSGKTAA
FLLPILSQIYTDGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRS
KVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML
DMGFEPQIRRIVEQDTMPPKGVRQTMMFSATFPKEIQMLARDFLEEYIFLAVGRVGSTSE
NITQKVVWVEESDKRSFLLDLLNATGKDCLGEIQHNSNGSGKDSLTLVFVETKKGADSLE
DFLYHEGYACTSIHGDRSQRDREEALHQFRSGRSPILVATAVAARGLDISNVKHVINFDL
PSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEQ
IHKGGSSRGRSKGRFSGGFGARDYRTSSSTSSSSSFGSSRTSSGRSGGSGGGGGHGGSRG
FGGGGGGYGGFYNSDGYGGNYNSQGVDWWGN
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggcagtggaaaatgccctcggtctagatcagcagtttgctggtctagac
ttgaattcctcagacgatcagagtggaggaggtacagcaagcaaaggccggtacattcct
cctcacttacggaatagagaagcttcaaagcaggcaggtaatgcctataactatgcggca
aactactattccaattcgatgccaccaagaagctattcccccagctgggactctcgtgga
ggtaatggctatatgaatggatatgatcgtgacagccggatgaatggctacgatcgtgat
cgtggtgtgtttggatccagaggaggatctggacgtgatgacagaggatttgatggtggg
tggaatgctggcagagacagggatgctgcatacagtagctttggtgcaaggagtgaccgt
ggatcaggaaaatcaagcttttttgctgagcgtggtaatggttcaagaggaaggtttgat
gaccgtggtggaagaggcggtgaatttgatggcattagcagtcgtggtggtgatagaagt
gcctttggcggcagatttgatcgtggtggaaacagtcgatggtctgataaaagtgatgaa
gatgactggtccaaaccacttgccccaagcgaacgtgtggagcaggagctgtttgctggt
gggaatactggcattaattttgagaagtatgatgacattccggttgaagcaacaggcaac
aactgtcctccacacattgagagcttcagcgatgttgacatgggagaaatcattatgggg
aacattgaactcacccgctacactcggcctactccagtgcagaaatatgctatccctatc
atcaaagacaagagagacttgatggcttgtgcccagacagggtctggaaaaactgctgca
tttcttctgcccatattgagtcagatatatacagatggcccaggtgatgccctcagagcc
atgaaggaaaacggaaggtatggacgccgtaagcaatatcccatctcactcgttttggct
cccacaagagagctggcagtgcagatatatgaagaagccagaaaatttgcatatcgctcc
aaagtccgcccctgcgtcgtgtatggtggggccgacatcggtcaacagatacgtgacttg
gaacgtggttgccatttgcttgtagcaactccaggtcgtcttgtagatatgatggagagg
ggaaagattggactggacttttgcaaatacttggtactggatgaagctgatcgtatgctt
gacatggggtttgaacctcaaatccgtcgtattgttgagcaagacaccatgccacccaaa
ggtgtgcgtcagactatgatgttcagtgctacttttccaaaggaaattcagatgcttgct
cgtgacttcttggaggaatatatctttctggctgttggcagagttggctctacatctgag
aacatcacacagaaagtagtgtgggtggaagagtcagacaaacggtcatttctgcttgac
ctcctaaatgccacaggtaaagactgtttgggagaaatccaacacaactctaatggctca
ggaaaagattccttgactctggtgtttgtggagactaaaaagggggctgattctctggag
gatttcctctaccacgaaggctatgcttgcacaagcatccatggtgatcgctctcagcga
gacagggaagaggcattgcaccagttccgttcaggcagaagtcccatcttggttgccact
gcagtagcagcaagaggattggatatctcaaatgttaaacacgtcataaactttgatttg
ccaagtgacatagaagaatacgtgcatcgcattggccgcacaggccgtgtcgggaatctt
ggtcttgccacatcattcttcaatgagaggaacataaatatcacaaaagatttgctagat
ctacttgttgaagctaaacaggaagtaccgtcttggctagaaaatatggcatatgagcag
attcacaagggtggaagcagtcgtgggcgatcaaaaggccgtttcagtggaggatttggt
gcccgagattatcgaacaagtagcagtaccagcagcagcagtagctttggcagcagccgc
acaagtagtgggcgcagcggtggcagtggtggtggcggtggccatggaggcagcagagga
tttggaggtggaggtggtggctatggcggcttctataacagtgatggatatggaggaaac
tataactctcagggggtagattggtggggaaactga
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