Podarcis raffonei (Aeolian wall lizard): 128414265
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Entry
128414265 CDS
T09310
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
praf03009
]
128414265 (PDCD11)
Ribosome biogenesis [BR:
praf03009
]
Eukaryotic type
90S particles
Other 90S particles
128414265 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
Suf
HAT_PRP39_C
OB_RRP5
OB_RRP5_4th
HAT_Syf1_CNRKL1_C
TPR_19
ARM_TT21
ARM_TT21_5th
TPR_CcmH_CycH
HAT_Syf1_M
Motif
Other DBs
NCBI-GeneID:
128414265
NCBI-ProteinID:
XP_053245269
LinkDB
All DBs
Position
5:complement(57174527..57203441)
Genome browser
AA seq
1828 aa
AA seq
DB search
MAALTPQACQKITMSSVEENFPRGGPQRKSQEEKAARQSTVEQDNLFKTQHEEVTKKRKK
NHQDETKPKKLKLEKKAAVKIGVKHFEFLTVESLTAGVLLLGCVKESNQFELVISLPNGL
TGFVQVTRISDAYNEMLNEQVATDEHLEDLNSLSDLFTPGMLVRCAVVGVEKTTTGRQSI
QLTINPKDVNKALNAATLRPGMLLSGCISSVEDHGYLIDIGIQATKAFLPRQKAKTYLQS
ANKGTELKIGQYFNCLIEEVKNGGRIIRMTIDQSEVAAAIATEEQNWSLGNLLPGLVVKA
QIQEVTPFGLSLSFLSSFSGLVDYMHMISTKSRNYSPGQTVKACILFNNPTSKAIRLSLR
PVFLQPGTQLGKLSSDQIGMVVPDSTVETFLKKTGAIFKLDGGCLAFAHIKHLSDTAKSF
KPAAFKPGSKHKCRIIEYSPMDDVVVVSLKQHIIEAPFLRYHDIHPGQVVEGTVLALKPF
GMQVKVTEHIKGLVPRLHLADVLLKQPEKKYSVGSTVRCRVLSCNPEARKLLLTLKRTLV
NSQLPALSSYEDAKPGLITHGFVACAREFGCIVKFYNDIKGLVPKNELGGAPSIVPQETF
YAGQVVKVIVLKCEPEQERLLLSFKLTNEAQAEDGGEKKTSKKREITYETGRIVDVKILR
KKEDGLEVTILPDNVFAYLSTNHLSDYVSNSKLWWSCLKADDSLHRVLCLHDKGGHVTLS
RKPSVISAIEEERVVKSFSDIQPGLLLTGFVRNVMPYGVFVEFPYGLTGLAPKSAMSDKF
VTDTKDHYVVGQTVVAKVTSIDEEKQRILLSLKVSECSSEDSISESFCLLHKYFKELQEI
KSIRSGRDDVDVVQKVCELKPGQKLMLTARKVNTDGSALFDSTSVSDLTIMATHSHLGGK
NIVQGEKTRAVVLCIDSLESKVYVSLREELLSPKPKKLKQNSQHQAIVQHVATEHAVVSL
VGNGQLVAIPVASHFNDTFRFDSEKLKVGQSVLVVLKTLQPGDCGLLLAVQDQKKRKAVI
RSRRESETLGETSAIVNHSLCLGDVVKGTVKSIKPTHVLVAINDQLIGSIHASQILDKVS
IGTFPTSVLRVGQQLTARVIGGKDIKNHRYLPITHPHFTRTCPELSIRPSELSGESKTAL
GPEDGNPEEILKPFKPGQTVTCFVKKYAAANKWLEVEVTPNIRGRVQQLLLSLRPTVLKH
AGKHFRSGQALAATVTGSDVTETKLHLSLTGVYSLEKGTITLGYVSKVIPHVGLNVQLPF
ERKGKVSLFHLSDSYAEQPLEMFSIGKIVRCCILSSEGKKMEVSLRQSRINPKSRCKVED
PEITSLDDLQNGQLVRGYVKSITPSGIFFGLSDSVVGQIPPQLISPLFISDHSLCAKYIH
AGQFLTAKVISINKEKNLAELSLLPEDTGKPSIIPESLELPVGEKDTQPRKRKRGNSESE
QEVKARKKKTRCPEDDDSGVEVYYREEEEGEEKKCAPKSKEKKVPRLQVSASFTWEEGLS
VLDTTMLNQREQSSDSEEEDDDVTESTTKKQTKKKKELEKQKAEKELSKLEAALMDPSRQ
PQTADDFDRLLLGNPDSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVW
VALLNLENMYGTEEALMKVFERAIQYNEPLKVFQQLADIYSGSEKYKQADDLYNTMLKRF
RQEKSVWVKYATFLLKRGLVEAAHKLLPRALKCLPVKEHLDVISKLAQLEFQFGDLEYGK
TVFENTLSTYPKRTDIWSVYIDMMIKHGNQKEVRDIFERVIHLSLAAKKMKFFFKRYLEY
EKKYGTAETVQAVKAAALEYVESKSSLA
NT seq
5487 nt
NT seq
+upstream
nt +downstream
nt
atggcggctctcacgccccaggcgtgccaaaagataaccatgtcatctgtagaagagaat
ttccctcgaggtggcccacaaaggaaaagtcaagaagaaaaagcggccagacagtcaaca
gtagagcaggataatttattcaaaacgcaacatgaagaagtgaccaagaaaagaaagaaa
aaccatcaagatgaaacaaagccaaaaaaactcaagcttgagaagaaagccgctgtaaaa
attggtgttaaacattttgaatttctaacagttgagtccctcactgcaggggtactgctc
ttaggatgcgtgaaagagtctaatcagtttgagctggtgatcagcttgcccaatggactc
actggatttgtgcaagtgacacgtataagtgatgcctataatgagatgctgaatgaacag
gtggctacagatgagcacttagaggatctgaattctctctcagatctctttaccccagga
atgctggtcagatgtgctgtggttggtgtggagaagactactacaggtcgtcagagtata
cagctaacaatcaaccccaaagatgtcaacaaggctttgaatgctgccactctgagacct
ggcatgctgctctctggctgcatctctagtgtggaagatcacggttaccttattgacata
ggcatccaagcaacaaaagcatttctgcctcgtcagaaagccaagacctacctgcagtca
gccaacaaagggactgagctgaagataggccaatacttcaactgccttattgaagaagta
aagaatggtgggcggataatccgcatgaccattgatcagtcggaggttgctgcagctatt
gccacagaagaacaaaactggtcccttggcaatttgctacctgggctggtggtgaaagcc
cagattcaggaggtgactccttttggactttctctaagttttttgtcttccttctctgga
cttgtggactacatgcacatgatttctacaaaatcaagaaactactcaccaggtcagacg
gtgaaagcatgcattctcttcaacaatcctacctccaaggcaatacgcctatctctgcgc
ccagttttcctccagcccggcactcaacttggcaagctatctagtgatcagattggcatg
gtagttccagactccacagttgagacctttctcaaaaagactggtgccatcttcaagctg
gatggtggctgcctagcttttgcacatataaaacatctttcagatactgccaaatctttc
aaacctgcagcattcaagcctggaagcaaacataaatgccgaattattgagtacagccca
atggatgatgtggtggtggtgtctctcaaacaacacattattgaggctccattcctgaga
taccatgatattcatcctggacaggtggtggaaggcacggtgttggctctgaagcccttt
ggcatgcaagtaaaggtgactgagcacatcaagggcctggttccccgactgcatctggca
gatgtgcttctgaaacagccagagaagaaatacagtgtgggaagcactgtccggtgtcgg
gtgctttcctgcaatcctgaagcaaggaaacttcttctgacgcttaagagaacacttgtc
aattcccaactccctgccctttccagttatgaagatgcaaagccaggcttgatcacccat
ggttttgttgcatgtgctagggagtttggctgcattgtgaaattctacaacgacataaag
ggccttgtccccaaaaatgagctcggcggggcaccttcaattgttcctcaagaaacattt
tatgcaggccaggtggtcaaagtgattgtcttaaaatgtgagcctgagcaggagagactg
ctgctgtcattcaagctgacaaatgaagcacaagctgaggatggtggagaaaaaaagact
tcaaagaagcgagaaataacatacgaaaccggacggattgttgatgtaaaaattctgagg
aaaaaagaagatggccttgaagttacgatcttgccggacaatgttttcgcctacctttcc
acaaatcatctctctgactatgtgtccaatagcaagttgtggtggtcctgccttaaagca
gatgatagtctccatagagtgttatgcctccatgacaagggaggtcatgttaccctgagc
agaaagccatcggtgatttcagcaattgaggaggaacgggtggtgaagagcttttcagac
atccagcctggattgctgctgactggctttgtgagaaacgtcatgccttatggtgtgttt
gtggagtttccatatggtctgacagggctggcacccaagtcggcaatgagtgacaagttt
gtgacagacaccaaagaccactatgtggtaggtcagactgtagttgccaaagtgaccagc
attgacgaggagaagcaacgcatcctgctgtccctgaaggtgtctgagtgctcctctgag
gattctatttctgagagcttctgtttgctgcacaaatactttaaggagctgcaggagatc
aagagtatcaggagtggaagagatgatgtcgatgtggttcaaaaggtctgtgaattaaaa
cctgggcagaagctgatgctgacggctcgcaaagtcaacactgatggttcagcactattt
gatagcacctctgtttctgacttgactataatggctactcatagtcaccttggaggcaaa
aacattgtccagggtgaaaaaacaagagctgtggttctctgcattgattccctagaatca
aaggtctatgtgtcgcttagagaggagttgctgtcccccaaacctaagaagttaaaacag
aactctcagcaccaagccattgtgcagcatgtggctacagagcatgcagttgtttcattg
gtaggaaatggtcagctggttgccatacctgtggcttcccacttcaatgacactttccgc
tttgattctgaaaaactgaaagtgggacagtcggtcctagtggttctgaaaactctccag
ccaggtgactgtgggctcttacttgctgttcaagatcagaagaagagaaaggctgtaatc
aggtcacggcgtgaatctgaaacacttggggaaacctcggccattgtgaatcactcgctg
tgcttgggagatgtggtcaaaggaactgtcaagtcaatcaagcctactcatgtcctagtg
gcaattaatgatcagctgatcggctccattcatgcatcccagatcctggataaagtttcc
ataggcacctttccaacatcagtgctaagagttgggcagcagttgactgctcgggtgatt
gggggcaaagacattaaaaatcacaggtatttgcccatcacccatccccattttacccgt
acctgcccagagctcagcatccgaccaagtgagctgtctggagaaagcaaaactgccctg
ggtccagaagatggcaatccggaagaaatactgaaaccctttaagcctgggcagacggtg
acatgctttgttaagaagtatgctgctgcaaataaatggctggaggtggaggtcacccct
aacattagagggagagttcaacagctgctactttcccttcgacccacggtcttaaaacac
gcagggaaacacttcagaagtggacaagctttggctgcgactgtgaccggctctgatgtc
actgaaactaagctccatctgtcacttacaggagtttactctctggagaaaggaaccatc
acgctaggctatgtgagcaaggtgattccgcatgttggcctgaatgttcagcttcctttt
gaaaggaaggggaaagtcagccttttccacctgagtgattcatatgctgagcagccacta
gaaatgttcagcattgggaaaattgtcaggtgctgtatcctttccagtgaaggtaaaaaa
atggaagtgtcccttcgacaatccaggataaatcccaagagccgttgtaaagtggaagac
cctgaaatcacatccctcgatgatcttcagaatggtcagcttgtcagaggctatgtcaaa
tccatcactccatcgggcatcttctttgggctgtctgactctgttgtgggtcaaatccca
ccacaacttatctctcctctcttcatctcggatcattcattgtgtgcaaaatacatacat
gccggccagtttcttactgccaaggttatcagtataaataaagaaaagaaccttgcagag
ctctctctccttcctgaagacactgggaagccaagcattatcccagagtccctggaactg
ccagttggtgaaaaggacacacagccgagaaagcgaaaaaggggaaactctgaaagtgag
caggaggttaaagcacgaaagaagaaaactcgttgccctgaagatgatgatagtggtgtt
gaggtctactatcgggaagaagaggagggagaagagaagaagtgtgcaccaaaatctaag
gaaaagaaagttccaaggctgcaggtttcagccagctttacatgggaagaaggcttaagt
gtgctggatacgaccatgttgaaccagagggagcaaagctctgacagcgaagaagaagac
gatgatgttacagagtccacgaccaagaagcagacaaagaagaaaaaagagctcgagaag
cagaaggcagagaaggaactctccaaacttgaagctgccctgatggatcccagccggcaa
cctcagacagccgacgactttgaccgattgctccttggcaacccagacagctccatcctc
tggttgcagtacatggcttttcaccttcaggctacggagatagagaaagcaagagctgtg
gcagaaagggcactcaaaaccatctcctttagagaggagcaagagaagctgaatgtgtgg
gttgcgctgctgaacctggagaacatgtacggtaccgaggaagcgctaatgaaagtcttc
gaaagagccatccagtacaacgagcctctgaaggtcttccagcagctggcagacatctac
agtggctctgagaaatataagcaagctgatgacttgtacaacacaatgctgaagcgcttt
cgtcaagaaaagtctgtgtgggtgaagtacgccacttttctcctgaaaagaggcttggtg
gaggcagctcataagctcctcccacgtgcactgaagtgcctgccagtcaaagaacatctg
gatgtgatctcaaagctggcgcagctggagttccagtttggtgatctggagtatggcaag
accgtttttgagaataccctgagcacctacccaaagcgtacagacatctggtcagtgtac
atagacatgatgatcaaacatggcaaccaaaaggaagtacgggatatttttgaacgtgta
atacacctaagcctagcagcgaagaagatgaagtttttctttaagcgctatctggaatac
gagaagaagtatggcacagcagaaacagtccaggctgtgaaggcagcagcactggaatat
gtggaatccaagagcagtcttgcttga
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