Podarcis raffonei (Aeolian wall lizard): 128414415
Help
Entry
128414415 CDS
T09310
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf04136
Autophagy - other
praf04140
Autophagy - animal
praf04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128414415 (ATG16L1)
04136 Autophagy - other
128414415 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
128414415 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
praf04131
]
128414415 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
praf03029
]
128414415 (ATG16L1)
Membrane trafficking [BR:
praf04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
128414415 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
128414415 (ATG16L1)
Mitochondrial biogenesis [BR:
praf03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
128414415 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
Beta-prop_DCAF4
eIF2A
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_IFT140_1st
NBCH_WD40
Ge1_WD40
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_NWD2_C
CCDC93_CC
Fez1
GAS
Phostensin_N
INO80F
AP5B1_middle
HTH_6
Lipoprotein_6
Vps39_1
HEF_HK
Beta-prop_WDR19_2nd
Synaptobrevin
PUMA_CC
V_ATPase_I
Motif
Other DBs
NCBI-GeneID:
128414415
NCBI-ProteinID:
XP_053245625
LinkDB
All DBs
Position
5:complement(62160225..62179282)
Genome browser
AA seq
623 aa
AA seq
DB search
MSSGLRAASLPAWKRHILDELRRRDRLQRQAFEEIILQYNKLLEKSDFHSVLADKLQVEK
YDLPSRHEISPGHDGARNDSHMQEISQLRIKHQEELTELHKKRGELAQSVIDLKNQIQQK
DSEMQTNNTKIVEYLQKISELETECQDLRNKLQDLERANQTLKDEYDALQITFTALEEKL
RKTTEDNQELVTRWMAEKAQEANRLNAENEKDSRRRQAKLQKELAEAAKEPLPIEQDDDI
EVLADETSDPADETSPVRAVNRTASKRHSQPAGGLLDSITNIFGLSESPLLGHHSSDTAR
RRSLSSCPTPQDNVEAHPGAGKEVRVPTTALCVFDAHDGEVNAVQFSPGSRLLATGGLDR
RVKLWEVCGEKCELKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDHRLRHTL
TGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDLVCTEQCVMS
GHFDKKIRFWDIRTECVVQEMELLGRITALDLNPERTELLTCSRDDLLKIIDLRVSAVKQ
TFSAPGFKCGSDWNRAVFSPDGNYVAAGSADGSLYIWNVLTGKVERVLSKHHSNSINAVA
WSPSGAHVVSVDKGNKAVLWSEF
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctggacttagggcagcgagcctccccgcctggaagcggcacatactggacgaa
ttgaggcgacgggaccggctgcagagacaggcctttgaagagattatcttgcagtataac
aagctcctggagaagtcagatttccattcagtgctggctgacaagctacaagtggaaaaa
tatgacttgccaagccggcatgagatcagtccaggacatgatggtgcaaggaatgattct
cacatgcaagaaatatcccagcttagaattaagcatcaagaggagctgacagagctgcac
aagaaacgtggcgagttggctcagtctgtgattgacctgaaaaaccaaattcaacagaag
gacagcgagatgcaaacgaataatacaaagattgtagaatatttgcagaagatatctgaa
ctagagacagagtgccaggacctgcggaacaagctacaagatcttgaaagagccaatcag
actcttaaggatgagtatgatgcactccagattacctttactgcccttgaggaaaaactg
agaaaaactacggaagataaccaagagctggtaacacgctggatggcagagaaagctcaa
gaagctaatcggctcaatgcagaaaatgagaaagattccagaagacggcaagccaagctt
cagaaggaactagcagaagctgcaaaagagccgctgccaattgaacaggatgacgatatt
gaagtgctggcggatgaaacctctgaccctgctgatgagacatctccggtgcgcgctgtc
aatcgaacagccagtaagcgacactcccagccagctggaggccttctggactctatcact
aatatatttggtctgtctgagtctccccttttgggacatcactcttctgatactgccagg
agacgctctttatcctcatgccccacccctcaagataacgtggaggcacatccaggcgca
ggcaaagaggtgcgagtccctaccaccgctctgtgtgtctttgatgcacacgatggggag
gtgaatgcggtgcagttcagccctggctcccggttactggcaacaggaggcctggaccgg
agagtcaaactctgggaagtttgtggagaaaagtgtgaacttaaaggctctctatctggc
agtaatgcagggattacaagcatagagtttgatagtgcgggttcttatttattagccgct
tcaaatgactttgccagtaggatctggaccgtggatgatcatcggttacggcacacgctc
acggggcacagtggaaaagtcttgtcggccaaattcctattggacaatgcacgcattgta
tctgggagtcacgacagaaccctcaaactgtgggacctgcgcagcaaagtctgcataaaa
acagtgtttgctggctccagctgcaatgatctggtctgcacagaacagtgtgtgatgagt
ggacacttcgacaagaaaattcgcttttgggatattagaactgagtgtgtggtgcaggaa
atggaattgcttggtaggattacagctctagatctcaacccagagagaacagaactcctc
acctgttcacgagatgacctgttgaagattattgatctcagagtcagtgctgtcaaacag
actttcagtgctccagggtttaaatgcgggtctgattggaacagagctgtattcagccct
gatggaaattatgtggcggctggctcagcagacgggtcactctatatttggaatgtgctt
actgggaaagtggagagggtactctctaagcatcacagcaactcaatcaatgctgtggca
tggtcaccatctggagcccatgtggtcagtgtggacaaaggaaacaaggctgtgctgtgg
tctgaattttga
DBGET
integrated database retrieval system
