Podarcis raffonei (Aeolian wall lizard): 128414415
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Entry
128414415 CDS
T09310
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf04136
Autophagy - other
praf04140
Autophagy - animal
praf04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128414415 (ATG16L1)
04136 Autophagy - other
128414415 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
128414415 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
praf04131
]
128414415 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
praf03029
]
128414415 (ATG16L1)
Membrane trafficking [BR:
praf04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
128414415 (ATG16L1)
Others
Rab GTPases of specific organelles
Auto phagosome
128414415 (ATG16L1)
Mitochondrial biogenesis [BR:
praf03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
128414415 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
eIF2A
ANAPC4_WD40
NBCH_WD40
Ge1_WD40
CCDC93_CC
Fez1
GAS
Phostensin_N
AP5B1_middle
HTH_6
Lipoprotein_6
HEF_HK
Vps39_1
Synaptobrevin
WD40_like
V_ATPase_I
Motif
Other DBs
NCBI-GeneID:
128414415
NCBI-ProteinID:
XP_053245625
LinkDB
All DBs
Position
5:complement(62160225..62179282)
Genome browser
AA seq
623 aa
AA seq
DB search
MSSGLRAASLPAWKRHILDELRRRDRLQRQAFEEIILQYNKLLEKSDFHSVLADKLQVEK
YDLPSRHEISPGHDGARNDSHMQEISQLRIKHQEELTELHKKRGELAQSVIDLKNQIQQK
DSEMQTNNTKIVEYLQKISELETECQDLRNKLQDLERANQTLKDEYDALQITFTALEEKL
RKTTEDNQELVTRWMAEKAQEANRLNAENEKDSRRRQAKLQKELAEAAKEPLPIEQDDDI
EVLADETSDPADETSPVRAVNRTASKRHSQPAGGLLDSITNIFGLSESPLLGHHSSDTAR
RRSLSSCPTPQDNVEAHPGAGKEVRVPTTALCVFDAHDGEVNAVQFSPGSRLLATGGLDR
RVKLWEVCGEKCELKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDHRLRHTL
TGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDLVCTEQCVMS
GHFDKKIRFWDIRTECVVQEMELLGRITALDLNPERTELLTCSRDDLLKIIDLRVSAVKQ
TFSAPGFKCGSDWNRAVFSPDGNYVAAGSADGSLYIWNVLTGKVERVLSKHHSNSINAVA
WSPSGAHVVSVDKGNKAVLWSEF
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctggacttagggcagcgagcctccccgcctggaagcggcacatactggacgaa
ttgaggcgacgggaccggctgcagagacaggcctttgaagagattatcttgcagtataac
aagctcctggagaagtcagatttccattcagtgctggctgacaagctacaagtggaaaaa
tatgacttgccaagccggcatgagatcagtccaggacatgatggtgcaaggaatgattct
cacatgcaagaaatatcccagcttagaattaagcatcaagaggagctgacagagctgcac
aagaaacgtggcgagttggctcagtctgtgattgacctgaaaaaccaaattcaacagaag
gacagcgagatgcaaacgaataatacaaagattgtagaatatttgcagaagatatctgaa
ctagagacagagtgccaggacctgcggaacaagctacaagatcttgaaagagccaatcag
actcttaaggatgagtatgatgcactccagattacctttactgcccttgaggaaaaactg
agaaaaactacggaagataaccaagagctggtaacacgctggatggcagagaaagctcaa
gaagctaatcggctcaatgcagaaaatgagaaagattccagaagacggcaagccaagctt
cagaaggaactagcagaagctgcaaaagagccgctgccaattgaacaggatgacgatatt
gaagtgctggcggatgaaacctctgaccctgctgatgagacatctccggtgcgcgctgtc
aatcgaacagccagtaagcgacactcccagccagctggaggccttctggactctatcact
aatatatttggtctgtctgagtctccccttttgggacatcactcttctgatactgccagg
agacgctctttatcctcatgccccacccctcaagataacgtggaggcacatccaggcgca
ggcaaagaggtgcgagtccctaccaccgctctgtgtgtctttgatgcacacgatggggag
gtgaatgcggtgcagttcagccctggctcccggttactggcaacaggaggcctggaccgg
agagtcaaactctgggaagtttgtggagaaaagtgtgaacttaaaggctctctatctggc
agtaatgcagggattacaagcatagagtttgatagtgcgggttcttatttattagccgct
tcaaatgactttgccagtaggatctggaccgtggatgatcatcggttacggcacacgctc
acggggcacagtggaaaagtcttgtcggccaaattcctattggacaatgcacgcattgta
tctgggagtcacgacagaaccctcaaactgtgggacctgcgcagcaaagtctgcataaaa
acagtgtttgctggctccagctgcaatgatctggtctgcacagaacagtgtgtgatgagt
ggacacttcgacaagaaaattcgcttttgggatattagaactgagtgtgtggtgcaggaa
atggaattgcttggtaggattacagctctagatctcaacccagagagaacagaactcctc
acctgttcacgagatgacctgttgaagattattgatctcagagtcagtgctgtcaaacag
actttcagtgctccagggtttaaatgcgggtctgattggaacagagctgtattcagccct
gatggaaattatgtggcggctggctcagcagacgggtcactctatatttggaatgtgctt
actgggaaagtggagagggtactctctaagcatcacagcaactcaatcaatgctgtggca
tggtcaccatctggagcccatgtggtcagtgtggacaaaggaaacaaggctgtgctgtgg
tctgaattttga
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