Podarcis raffonei (Aeolian wall lizard): 128414452
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Entry
128414452 CDS
T09310
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
128414452 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
praf04131
]
128414452 (VPS8)
Membrane trafficking [BR:
praf04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
128414452 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
zf-RING_Vps41
TPR_Vps41
TPR_VPS8_2
WD40_CDC20-Fz
Clathrin
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_2
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
128414452
NCBI-ProteinID:
XP_053245731
LinkDB
All DBs
Position
5:63134844..63221716
Genome browser
AA seq
1449 aa
AA seq
DB search
MEDELKMESQNLDQDQGPFVADESSQQPLCQETSSPKLSVTELSRELDSKSELIDDKEFD
IPQVDTPPTLESILNETDDEEEPFVLEDPSLLNIDNIDTHSYDTSSVASSDSGDRTHLKR
KKKLRDSFSIHGSVIRLSLLKGISAQIVSAAAKVDAGLPTAIAASSLIAVGTSHGLALIF
GKQGYQALRLCLGSTAVGAQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSIT
DAHPPGTAILHIKFTDDPTLAICNDSGGSVFELSFRRVMGVRTCESRCLFSGSKGEVCCI
EPLHAKTELRDHPITQYSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHF
VAVQTSVNPVLAFCRGDVVHFLLVKRDESGAIHVTKQKQLHLHYDLINFTWINSRTVVLL
DSVEKLHVIDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSIS
NCGGQIFYLGTKSVHVMTLRSWRERIDHLLKQDCLNEALALAWSFHEGKAKAVVGLSGDE
QKRKAVVADRMVEILIHFADRTMKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRMDLLF
SQMYDKMSENSVAKGVFLECLEPYILSDKLMGITAQIMKDLLLHFQDKNLMANMEACIVH
MDITSLDIQQVVLMCWENRLYDAMIYVYNSGMNDYITPMEKLFKVIAHPLSAGKSLSDEQ
VIMGNKLLVYISCCLAGRAYPLGNIPEDLVPLVKNQVFEFLIRLHSAEAPTDEEVYPYVR
TLLHFDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFL
ARQLAKPNNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEENRLIH
MAEKAEFYQICEFMYEREHRYDKIIDCYLRDPLRKEEVFTYIHNILSIPGYNTEEKQSVW
QKAMKHIEELLSVSPFKAADLISVHFSEQIEQIIQNLQDQCLLFQFLRSLLDPREGVNQE
LLQLSPIVTEQFIELLCRYDPNQVLETLQFLESYRLEEAIQITQKYQLHEASSYLLEKKG
DIHGAFLVMLEWLQSKLLTLTCEDESSIEFPSLKDIEDSLAKTIALCQRNSHKLNQPQRE
ALWFPLLEAMMSPQKLSSSTALCHYSEFLKNLTMQVLNNMAAFIALPLILQKILQDPVYG
RGKLGEIQGLVLGMLDSFNYEQTLLETTTNLLNHDLHWSLRNLKASVTRGLNPKQDYCCI
CLQQYKRRQETADQIIVFSCGHLYHSLCLLSKECGTETDGQMRWTCFKCNASNKGGKLSG
ACLEMKKGTPVSLAQLKGRKCPAVLVSMTTGKLPAIYQLISPKNNLIDGYTQTNSEAILD
PQQAQAFDQLCRLYRGTSRLALLTELSRDRGGEKHGLLHISQGDSALNSVFQNETFQLHL
TPPPPLVED
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atggaagatgagctcaagatggagagtcaaaaccttgaccaagatcaaggtccctttgtg
gcggatgaatcaagtcagcagccattgtgccaggaaacctcttcccccaagctgtctgtg
actgaactgagtagagagttggactccaagagtgagctgatagatgacaaggagtttgat
attcctcaggttgatactcccccaacactggaaagtattttaaatgagactgatgatgaa
gaagagccatttgttcttgaggatccttcccttctaaatattgataacattgacactcac
tcatatgatacttcatctgtagcaagctctgacagcggcgatagaacacacctgaaaagg
aagaagaaacttcgtgattctttctccatccatggctctgtgatacggctgtcccttctg
aaaggaatctctgctcagatagtatctgcagcggccaaagtggatgctggcttacccact
gcaattgcagcctcaagtctcatagcagtgggaacatcccatggactggcactgatattt
ggtaagcaagggtaccaggctcttcggctttgtttgggcagtaccgcagttggagcacag
tatggggctatatctgctcttagcatcaacaacgattgttcaagacttctgtgtggtttt
gcaaaaggacagattacaatgtgggatctggctagtggaaagcttttgagatcaataaca
gatgctcatcctccaggaacagcaattttgcacattaagtttacagatgatccaacgcta
gcgatttgcaacgacagtggaggctcagtattcgaactctctttcaggagagtcatgggt
gtgagaacatgtgagtcacgctgcttgttcagtggttccaagggagaagtctgctgcatt
gagcctttacatgcaaagactgaactgagagaccatcccatcacccagtactccctgctt
gcaatggcttccttaacaaagattcttgtcattggcttgaaaccgtctttgaaagtgtgg
atgactttcccatatggtcgtatggacccctccagtgttccattgctagcatggcatttt
gttgctgtgcagacatctgtgaatcccgtgcttgccttctgccgaggagatgttgtccat
ttccttctggttaagagagatgaatctggagcgatacatgttacaaagcagaagcagcta
catctccactatgacctcattaattttacatggataaattcacgcacagtggtgcttctg
gatagtgtggagaaactgcatgtgatagatcgtcagacacaggaggaacttgagactgtg
gagatctcagaagtccagttggtgtacaacagcagccatttcaaatcattggctacagga
ggcaatgtcagccaagcactggcgctggtgggggagaaagcttgttaccagtcaatcagc
aactgtggtggtcaaatattttatttaggtacaaagtctgtccatgtgatgacactgaga
agctggagagagagaatagatcaccttctgaaacaagactgccttaatgaagcactggct
cttgcttggtcctttcacgaagggaaagccaaggctgttgtagggttgtctggagatgaa
cagaaacgaaaggctgttgttgcagacagaatggttgaaattcttatccattttgctgat
cgaacgatgaagaaatgtcctgatcagggtaaaatccaggttatggagcagcactttcag
gatatggtgcctgtcattgttgattactgccttctgcttcagcggatggatctgttgttt
agccagatgtatgacaagatgagtgaaaattctgtggcaaagggtgtctttctggagtgt
cttgagccatacattttaagtgataaattgatgggaattacagctcaaattatgaaagat
ttgctgcttcacttccaagataagaatttaatggcaaacatggaggcttgcattgtacat
atggatatcaccagcctagacatacagcaggtggtcctcatgtgctgggagaatcgtttg
tatgatgccatgatctatgtctacaacagtggcatgaatgactatattacaccaatggag
aaattgttcaaggtcattgctcatcctcttagtgctggaaagtctctctcagacgagcaa
gtcatcatgggcaacaagctgcttgtctatataagttgctgtttggctggtcgagcttat
ccactgggcaatatccctgaagatctggtacctttggttaaaaatcaggtctttgaattc
ctcattcgtttgcactcagcagaggcacccaccgatgaagaggtttacccttatgtccgt
acactgctgcacttcgatacacgagagttcctcaatgttcttgcactgacatttgaagac
tttaagaatgacaagcaagctgtagagtaccaacagaggattgtggacatccttctgaag
gttatggtggagaattctgattttaccccctcacaagttggatgtctctttactttcctt
gcccgacagcttgctaagcccaacaacacactgtttgtaaataggactctatttgatcag
gtccttgaatttctctgcagtcctgatgatgattcacggcactctgagagacagcaggtt
cttctagaattgctccaagctggaggcatagtacagtttgaagagaacagactcattcac
atggcagaaaaagctgaattctatcaaatctgtgagtttatgtatgaacgggaacatcgc
tatgataagataattgattgctacttacgagatccattgagaaaggaagaagttttcact
tatatccacaatatactctccattcctgggtataacacagaagaaaaacagtctgtgtgg
caaaaagctatgaaacacattgaggagctgctgtcagtgagtccctttaaagcagccgat
ctgatttcagttcacttcagtgagcagattgaacaaataattcagaaccttcaggatcaa
tgtttgcttttccagtttttgaggagcctacttgacccaagggaaggtgtcaatcaagag
ttgcttcagctttctcccatcgttactgagcagtttattgagttgctgtgtcggtatgat
cctaaccaggtcttagagactttgcaattcctggagtcctacaggctggaagaggcaatc
cagatcacacagaaataccagctccacgaagcttcttcctatctacttgagaagaaagga
gatattcatggtgccttcctagttatgcttgagtggctacaaagcaagttgttgacactt
acatgtgaagatgaaagttcaatagaatttccttcattaaaggatattgaagatagctta
gcaaaaacaattgcactttgccagaggaattcacacaagttaaatcaaccacagcgagag
gcactatggtttccactcttagaagcaatgatgtctccccaaaagttatccagttctact
gcgctgtgtcattactctgaatttttgaagaacttgacgatgcaagtgttgaacaacatg
gcagcattcattgccctgccactgatcttgcagaaaattctacaggatccagtctatgga
agaggaaaactgggagaaattcagggtcttgttctgggcatgctagacagctttaattat
gaacaaactctcttggagactacaaccaacctactcaaccatgacctccactggtcctta
cgtaatttgaaagcatctgtgactagagggctgaaccccaagcaagattactgttgtatt
tgtctacagcagtacaagagaagacaagagactgctgaccaaatcatagtcttcagctgt
ggccacttgtaccattctctctgcctcctgagtaaagagtgtggtactgaaacagacggt
cagatgagatggacttgttttaaatgcaatgcaagtaacaaaggaggaaaactaagcggt
gcttgcttagaaatgaagaagggaactcctgtatctctggcacagttaaaaggaagaaaa
tgccctgcagtgctcgtttccatgacaacaggaaaattgcccgcaatatatcagctcatc
agccccaagaacaatctgattgatggttacacacaaaccaattctgaggccatcttggat
ccacagcaagctcaagcttttgaccagctttgtcgtctgtaccgaggaacatcaaggttg
gctcttctgactgaactctcacgggaccgtggtggagaaaaacatgggctcctccatatc
tcccagggtgattctgccctgaatagtgtcttccagaatgagaccttccaacttcacctc
actcctcctcctcctctagtggaagactaa
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