Podarcis raffonei (Aeolian wall lizard): 128414588
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Entry
128414588 CDS
T09310
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf04382
Cornified envelope formation
praf04510
Focal adhesion
praf04512
ECM-receptor interaction
praf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128414588 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128414588 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128414588 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128414588 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
praf04147
]
128414588 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
praf00536
]
128414588 (COL4A4)
Exosome [BR:
praf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128414588 (COL4A4)
Glycosaminoglycan binding proteins [BR:
praf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128414588 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128414588
NCBI-ProteinID:
XP_053246053
LinkDB
All DBs
Position
5:complement(73031824..73107993)
Genome browser
AA seq
1677 aa
AA seq
DB search
MCSLKRITFIFTAACWLLFVLSLQPVKGGQYAYISRCGGQDCTACQCFPEKGSRGQPGQM
GPQGPIGALGLIGPIGLPGVKGQRGDIGLPGPSGQRGSQGPTGVPGFSGLDGIPGLPGPD
GPRGKPGLDGCNGSRGDPGFPGEAGRIGPRGSFGIPGQKGEKGNSVYVSQFIKGPSGERG
DPGSHGMPGPRGERGPRGPPGFPGQPGIQGTTGPPGLPGEQGNPGIGVEGQKGEPGDVGP
AGSAGQPLLVGPPDSQLLKGEKGVKGMPGTIGAKGLPGRKGSLGIGEKGERGIPGFPGLR
GSPGSYGSPGIPGSKGETGMAGFPGEDGLPGIKGDLGDSGLPGPPGPRGIPRPGIKGLQG
DPGDPGPPGNVGADGLMGPPGAYGRQGEDGTSIPGPKGILGVQGPQGFRGDPGLPAIADM
ALGRPGSPGLPGFPGTPGKQGLPGPPGVACTGRGSPGPLGAKGQKGSPGERGAKGEKGNA
SSCLCGAGPCGAPGIRGPPGVPGRKGEVGLPGKYGRTGDPGLPGAVGPPGSPGIPGPFGL
TGEKGDKGDPARIRIKGIKGQRGLQGEPGFPGRNGIAGRNGELGLPGEKGFKGLDGRALP
GDKGFPGSPGLPGPKGPIGPTGFGIQGPQGVRGLPGSPGSPGIRGPPGPKGEKGATLPYT
AAYPGNPGAPGFKGISGPKGLRGQPGQAGPNGFDGFKGQQGRPGIPGNPGPEGFRGETGD
QGAQGESGPRLDGAPGLPGPPGIEGPKGILGDNSYGPPGIPGNRGLPGIPGLQGLRGEPG
FAGLQGQPGIPGFPGAKGLRGRKGDIGVTGGPGSPGLPCDKGLQGLPGPPGSFGPPGFPG
LQGLKGPKGDMGAPGPAGMKGMPGFPGVQGPPGLPGLRGKPGLPGENGLPGRPGQKGSQG
SQGMQGFPGLPGSEGELGAPGAKGEEGQAGLRGPPGECGSMGLKGERGPPGEDGRVFILK
EKGQKGEPGFPGDKGIPGTQGDKGNTGFRGIPGSPGRSALPGTRKGEPGDAGQAGFQGPP
GLPGPTGLRGITGFQGPQGDQGAQGLPGIPGSSGLDGAKGSKGNRGDPAVSYGQPGKKGP
AGDRGLPGLDGLPGDQGTTGVQGRPGRQGPKGLTGYSGTPGFPGIQGAAGIPGAPGEQGN
PGLLGAPGFQGLPGSPGRKGLSGPPGLNGLNGLQGQKGLPGSPGLSEMGPAGCIGEPGPK
GNRGEPGLPGISRPGPPGDAGLLGPPGKPGASGSAGPMGQPSVNIIPGPPGDQGPAGLDG
VRGLPGKPGPPGKTILIKGDPGDCGALGAPGAPGPPGKPGPKGISGNQGREGSKGPTGNP
GPRGPPGAPGEPGDQGLRGSTGRMGPKGDPGEPGSVDYSSCPKIPGPPGVLGPRGSPGVM
GLRGPAGFPGPPGEKGEEGSLGQQGQDGLPGPPGPLGDEGNIGEKGHTGLQGFPGEIGMP
GPPGPDTRAAGGFLIVVHSQSDQIPLCPEGMPRLWTGYSLLYLEGQEKAHNQDLGLAGSC
LPVFSTMPFAYCNIHQVCYYASRNDKSYWLSSAAPLPMMPLTEEEIQPYISRCAVCEAPA
QAVAVHSQDQSIPPCPSNWGSLWIGYSFLMHTGSGDQGGGQSLMSTGSCLEDFRSAPFIE
CQGQRGTCQFFTNEYSFWLSTVNPEMQFTSVPRSETLKDEQEQRRNVGRCQVCMKYG
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atgtgttctttaaaaaggattacatttattttcacagctgcatgttggctgctatttgtt
ctttcactccaaccagttaaagggggtcagtatgcatatattagtcgttgtggtggacag
gattgcacagcttgtcaatgttttcccgagaaaggctcaagaggacaacctggtcagatg
gggccccagggcccaattggggctttgggtttaataggacccattggtttgccaggagta
aaaggccagaggggtgatattggtctgcctgggccaagtggacaaagaggaagtcagggt
cctactggcgttccaggattttcaggtttagacggtatacctgggttaccaggacctgat
ggacccagaggtaagcctggcttggatgggtgcaatggctcaaggggagatccaggattt
cccggagaggctggtcgtattggcccaagaggctccttcggtattcctggtcaaaaggga
gaaaaaggaaattctgtgtatgtttctcagttcattaaagggccttcgggagaaagaggg
gatcccggatcccatggtatgcctggccccagaggagaacggggacccagaggtccacct
ggatttccaggccaaccaggcatacagggtactacaggtcctcctggtctgccaggcgag
cagggaaatccaggaattggcgtggaaggacagaaaggggagccgggtgatgttggacct
gctggatctgccgggcagcctttattagttggacctcctgattctcaactgttaaaggga
gaaaagggtgtaaaaggaatgcctggaactataggtgccaaaggattgcctggccgcaaa
ggttcacttggaattggagagaagggtgaaagggggattcctggctttcctggattgcgg
gggagtccaggttcttatggatcaccaggaattccaggaagcaagggtgaaactggaatg
gctggatttcctggagaggatgggcttccaggaattaagggggatctaggagacagtggg
ctgccaggtccaccaggacctcgaggaataccacgccctggaataaaaggtcttcaagga
gaccctggagaccctggacctcctggaaatgtgggggcagatgggttgatgggccctcct
ggtgcatatggcaggcaaggggaagatggaaccagtatccctggtcccaaaggtatattg
ggagtacaagggcctcagggctttcgaggtgaccctggtctccctgctatagctgacatg
gcactaggaaggcctggctctccagggttgccgggttttccaggaacaccaggaaagcag
ggtttgcctggaccacctggtgtggcttgtactgggagagggtctcctggaccactggga
gctaaaggccagaagggatcacctggagaaagaggtgcaaaaggagagaaaggcaatgca
agtagctgcttatgtggtgctggtccttgtggtgcacctggaatacgaggtccgccaggt
gtccctggaagaaaaggagaagtagggttacctggaaaatatggaagaacaggtgatcca
ggcttacctggtgcagtagggccaccaggttcccccggaataccaggtccatttgggttg
actggtgaaaaaggtgataagggtgacccagctagaataagaataaaagggataaaagga
caaagaggtcttcaaggggagcctggatttcccggaagaaatggtattgctggcaggaat
ggagaactaggactgcctggtgaaaagggctttaagggccttgatggaagagctttgcca
ggtgataagggatttcctggttcccctggacttcctggcccaaaagggccaataggacca
acaggttttggaattcagggtcctcaaggtgtccggggtctgcctgggagtccaggaagc
ccaggtattagaggaccacctggcccaaaaggtgaaaaaggtgctactcttccttacaca
gcagcataccctgggaatccaggtgcacctggttttaaaggtatatcaggcccgaaagga
ttgagagggcagcctgggcaagctggtcccaatggttttgatggcttcaaaggccaacag
ggcagaccaggaataccaggcaatcctggtccagaaggtttcaggggtgagactggtgat
caaggtgcacaaggtgaaagtggtccaaggctggatggagctccagggttgccaggtcct
cctggtattgaaggtccaaaaggcattttaggtgacaacagttatggtcctccaggaatt
ccaggcaacagaggtcttcccggtataccaggcctgcaaggcttaagaggtgaaccaggt
tttgctggccttcaaggacagcctggtatcccaggatttccaggagcaaaaggtctcaga
ggtagaaaaggtgacataggagtcacaggaggccctgggtcacctggtctgccatgtgac
aaaggcttgcaggggctgccaggacccccaggctcttttggaccaccaggctttccaggt
ttacaaggcttgaagggtcctaaaggtgatatgggtgcaccgggcccagctggaatgaaa
ggcatgcctgggtttcctggagtacaagggccacctggcctcccaggcttaagaggaaaa
ccaggtcttccaggggaaaatggattgccaggccgcccagggcaaaaagggagccaaggg
tcccaaggcatgcagggtttcccaggactcccaggaagtgaaggagaactgggagcacct
ggtgcgaaaggtgaagaaggacaagcaggtctacgtggccctccaggagaatgtgggtct
atgggattaaagggtgaaagaggacctccaggagaggatggccgtgttttcatattgaaa
gagaaaggacaaaaaggggagccaggctttcctggtgataaaggcatcccaggaacacag
ggtgataaaggcaacactggattcagaggaatcccaggatcgccaggcagaagtgcactt
ccaggtactcgaaaaggcgaacctggcgatgctggacaggctggttttcaagggcctcca
ggtctcccaggacccacaggactgagaggaatcactggctttcaaggaccacaaggtgac
cagggtgcacagggattgccagggattccaggaagttcaggacttgatggtgcaaaagga
tctaaaggtaacagaggtgacccagctgtctcttatggccagcctggtaagaaaggtcct
gcaggagatcgaggattgccaggacttgatggattaccaggggaccaaggaaccacaggt
gttcaagggagaccaggaagacagggacccaaaggactaactggatactcaggaacacct
ggcttcccaggtatccagggagctgcaggcattccaggagcaccaggtgaacaaggtaac
cctggtcttttgggagctccaggttttcaaggattacctggcagtcctgggagaaaaggc
ctttcgggaccgcctggattaaatggcctgaatggactacagggtcaaaagggcttgcca
ggatctccaggtttaagtgaaatggggcctgcaggatgcataggagaacctgggccgaaa
ggcaacagaggagaacctggactaccaggaatttcccgtccgggtccccctggagatgct
ggactactaggtccccctggcaagccaggtgcttctgggtctgctggtcctatgggacag
ccttctgtaaatataattcctgggcctccaggtgaccaaggccctgctggattagatggt
gttagaggtctccctggcaaacctggtcctccagggaagactattctcattaaaggagac
ccaggtgactgtggggctttgggggcacctggggctcctggtcctcctggcaaacctgga
cctaaaggtatctcgggaaatcaaggaagagaaggctcaaaaggtccaacgggaaatcct
ggcccacggggacctcctggtgcccctggagagcctggggatcaaggtttgcgaggatca
actggtcgtatgggtcccaaaggtgacccaggagaacctggaagtgttgattattcctca
tgtcccaagattccagggcctcctggtgtattgggcccaagaggatcaccaggtgtcatg
ggattaagagggccagcaggcttccctggccccccaggagagaaaggagaagaagggtca
ttgggtcaacagggtcaagatggcttgcctgggccaccaggaccccttggtgatgaaggt
aacataggagaaaaaggacacacaggactacaaggttttccaggtgaaattggaatgcca
ggtccacctgggcctgacacaagagctgccggtgggttcctgattgttgttcatagtcaa
tcagatcaaataccactgtgcccagagggaatgccaaggttgtggactggatatagcctg
ctgtatcttgaagggcaggagaaggcccataatcaagatcttggtctcgctggatcttgt
ctccctgtgttcagcaccatgccctttgcctattgcaatatccatcaggtctgctactat
gcaagtcgaaatgataaatcttactggctgtcaagcgcagctcctttgcccatgatgccc
ctcactgaagaagaaatacaaccttacattagcagatgtgctgtctgtgaagctcctgcc
caagctgttgcagttcatagtcaagatcaatccattcctccctgtccatcaaactgggga
agcctatggataggctactcatttttaatgcacactggatctggtgatcagggaggtgga
cagtctctcatgtcaactggaagctgccttgaggacttcagatcagcacccttcattgaa
tgccaggggcagcgagggacatgccaattctttaccaatgaatacagcttctggttaagt
actgtaaacccagagatgcagtttacttcagtccctcgctcagagactctcaaagatgag
caagaacaacgccgcaatgtaggtagatgccaggtctgcatgaaatatggctaa
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