Podarcis raffonei (Aeolian wall lizard): 128415254
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Entry
128415254 CDS
T09310
Symbol
TNR
Name
(RefSeq) tenascin-R
KO
K06252
tenascin
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf04510
Focal adhesion
praf04512
ECM-receptor interaction
praf04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128415254 (TNR)
04518 Integrin signaling
128415254 (TNR)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128415254 (TNR)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
praf00536
]
128415254 (TNR)
Glycosaminoglycan binding proteins [BR:
praf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128415254 (TNR)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
EGF_Tenascin
FN3_DSCAM-DSCAML_C
Fn3_PBP1
Pur_ac_phosph_N
Fn3_Dep-1_3rd
EGF_2
Fn3_VIN3
FN3_Tor_3rd
Interfer-bind
DUF7949
Lzipper-MIP1
EGF
TSC22
DUF7743
Motif
Other DBs
NCBI-GeneID:
128415254
NCBI-ProteinID:
XP_053247214
LinkDB
All DBs
Position
6:complement(3777620..4154582)
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AA seq
1356 aa
AA seq
DB search
MGADGEHAVLRNILVSLNLMLLGSIFRPFECRLEVMTERVKRQVTDAEGGFTNYTAPIKD
QPMVFSHIYNINVPLDSLCATSLEASSDPEVSSEDDRMTEYTEQTSDSESQVTFTHRINL
PKQTCKCTASSRDIQELLSRIEMLEREVSMLRDQCNSNCCQENAATGQLDYIPHCSGHGN
FSLESCGCVCNEGWAGKNCSEPLCPMGCSSRGVCVDGQCICDSDYSGEDCSEARCPTDCS
SRGLCVDGECICEEGFAGEDCSELRCPEDCSGKGRCANGTCICQEGYVGEDCGQLRCLNA
CSGRGFCQEGLCSCEEGYQGRDCSAVAPPENLRVAAVGDRSIDLEWDGPMAVTEYVISYQ
PAIPGGLQLQQRVPGDWSSVTIKELEPGLTYNVTIYAVISGVLSAPAGVKVATQLSTPQG
LQFKTITETTVEMQWEPFSFLFDGWEISFIPKDNEGGVIAQLPSSVTTFNQTGLKPGEEY
TVNVVALKEQARSPPASASVSTLIDGPTQILVRDVSDTVAFVEWTPPRAKVDYILLKYGL
ENGEGGKTTFRLQPPLSQYSMQALRPGSRYEVSIAAVRGTNESDAAVTLFVTEIDAPKNL
RVLSRTYDSLELEWDNSEAEVENFKVIYSTLAGEQYHELLVPRSASATTRATLTDLVPGT
EYGVGISAVMDGKQSVPATMNARTELDSPHDLIVTASTESSISVSWTKAKGPIDHYRVIF
IPASGMASEVTVAKDKSELTLSDLEPGTEYTISVIAERGRQQSLESTVDAFTGFRPITQL
HFSHVTSSSVNITWSDPSPPADRLILNYSPKDKEETKQVMLDPTKRHAALFGLQPSTEYV
VSLVAVHGLVSSEPIMGSIKTGIDPPRNLTIDNVTTDSVTVHWAPPIASFDHYRIAYKSA
QGRVDSLVIAKGVTEYTLSHLQSATEYEISLKSVRSREESEPLSHILYTAMDNPESLTAT
NITPTETLLKWDPPMAEVENYVIVLTHDTGAGETILVDGTNQEYQLISLLPSTSYGVTMY
ATNGPVTSRTIFTNFTTLLDPPSNLTASEVTRRSALLSWLPPMAEIENYIMTYRSPDGSR
KELIVDAEDTWIRLEGLSENTEYTVRLQAAQDAVRSGFTSTIFTTGGRVFMNPQDCAQHL
MNGDMMNGVYTISLNGDLGQRVQVYCDMTTDGGGWIVFQRRQNGLTDFFRKWADYRIGFG
NLEDEFWLGLDNMHKITSQGRYELRIDMRDGQETAFAYYDKFSIGDARSLYKLRIGDYNG
TAGDSLTYHQGRPFSTRDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESRHSQGIN
WYHWKGHEFSIPFVEMKMRPYNHRNTLGRKRRSLQL
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atgggggctgatggtgaacatgcagttctaaggaacattctagtcagtctcaacttaatg
ctgctagggtccatcttcagacctttcgagtgccgcctggaagtgatgacagagagagtc
aaaagacaggtgactgacgccgaagggggctttaccaactacacggcacctatcaaagac
cagcccatggtcttcagccatatatacaacataaatgtgcctctggacagcctctgcgca
acatccctagaggcttcctctgacccagaggtgagttcagaagatgaccggatgacggaa
tacaccgaacagacctcagacagtgagagccaggtcaccttcacccacaggataaacctc
cccaaacagacttgcaagtgtacagcctcctcccgggacatacaagagctgctgagcagg
attgagatgctggagagggaggtgtccatgcttcgtgaccagtgcaactccaattgctgt
caagaaaatgcagccacagggcagctagattacatcccccactgcagcggccatggcaac
ttcagcctggaatcctgtggttgtgtctgcaatgaaggctgggctgggaagaactgctcc
gagcccctctgccccatgggctgctcaagccggggcgtgtgcgttgatgggcagtgcatc
tgcgacagtgactatagcggagaggattgctcagaggcccgctgccccaccgactgcagc
tcccgagggctctgtgtggatggagaatgcatctgcgaagagggctttgctggggaagac
tgcagtgagctcaggtgccctgaggactgctcaggaaaggggagatgtgccaacgggact
tgcatctgccaggagggctacgtgggggaagactgcgggcagctgagatgcctcaacgcc
tgcagcgggcgcggattctgccaggagggcctgtgctcttgcgaggaaggctaccagggg
agagactgctcagcagttgctccacctgagaacctgcgagtggctgcagttggcgacagg
tccatcgacctagaatgggatgggccaatggccgtgactgaatatgtgatctcctaccag
ccagcaattcctgggggtcttcagctccagcagcgggtgcctggggactggagcagtgtc
accatcaaggagctggagccaggcttgacatacaacgtcaccatctatgctgtcatcagt
ggtgtgctcagcgccccagccggggtcaaggtggccacccaactctccactccacaaggg
ctgcagttcaaaacaatcacagagaccaccgtcgagatgcaatgggagcccttctccttc
ttgtttgatggctgggagatcagctttatccccaaggacaatgaagggggtgtgattgca
cagctccctagcagcgtgacaacgtttaatcagacaggcctgaaaccaggtgaggagtac
acagtcaatgtggttgccctcaaggaacaagcccggagtccgccagcctcggccagtgtc
tcaaccctaattgatggaccaacccagatattggtgagagatgtctcagacacagtggca
tttgttgaatggactccaccccgggctaaagttgactacattctgctgaagtatggcctc
gagaatggagaagggggaaagaccaccttccgactacaaccccccctcagccagtactcc
atgcaggccctgcgccctggctcacggtacgaagtctccatcgctgccgtccgtgggacc
aatgagagcgacgccgcagtcaccctcttcgtcacagaaattgatgctcccaagaacttg
cgtgtactctcccggacatatgacagcctggaactggagtgggacaacagtgaggcagag
gtggagaatttcaaggtcatctatagcactctggccggagagcaataccatgagcttcta
gtgccacggagtgcaagtgccacaaccagggccaccctcacagatttggtgccaggaaca
gaatatggagttggaatttcagctgtaatggatggcaagcaaagtgttccagctaccatg
aatgcaaggactgagcttgacagccctcacgacctcatagtgacagcttccacagagtca
tccatctctgtgtcctggaccaaagccaagggtcccattgatcactaccgggtcatcttc
atccccgcttcaggaatggcatctgaggttaccgttgccaaagacaagtctgagctcaca
ctatcagacttggaacctgggactgaatacacaatctctgtcattgctgaaagaggccgt
cagcagagcctggagagcaccgtagatgccttcacagggttccggccaattacacagctt
cacttttctcatgtgacttcctccagtgtgaacatcacttggagtgacccctctcctcca
gcagataggctgatactgaactacagccccaaggacaaagaggaaaccaagcaagtgatg
ctagacccgaccaagagacatgctgccttgtttggcctgcagccgtccacagagtatgtt
gtgtccttggtggctgtgcatggccttgttagctctgagcccatcatgggctccatcaaa
acagggattgatccaccaaggaacctgaccattgacaacgtgactacagattctgtgacg
gtccactgggctcctcctattgcatcttttgaccactataggatagcctacaaatctgcc
caaggacgagtggacagcctagttattgccaaaggtgttactgagtacacgctcagccac
ctgcagtctgccacggagtatgagatcagcttgaagagtgtccgaagcagagaagaaagt
gagcctctctcacacatcctgtatacagccatggataatccagagagcttgactgccacg
aacatcaccccaacggagaccctgctgaagtgggacccgcccatggctgaagtggagaat
tatgtcattgtcctcacacatgacacaggtgccggagaaaccattttagtggacggaacc
aaccaggagtaccaactcatcagtttgctgcccagtacaagctacggcgtcaccatgtat
gccaccaacgggcccgtcaccagcagaaccatcttcaccaactttacaactcttttggat
cctccttcaaatttgactgcgagtgaagtgactcggcgaagtgccctgctttcgtggctg
cctcctatggctgagattgagaactacatcatgacttaccggtcacctgatgggagccga
aaggaattgattgtggatgcagaagacacctggatccgcctggaagggctttcggaaaac
acagaatacacagtgcgcctgcaagcagcccaagatgctgtgaggagtggattcacctct
accatcttcactacaggaggtcgtgtgtttatgaatcctcaagattgtgcccaacatttg
atgaatggcgacatgatgaacggtgtttacaccatctctcttaatggggatcttggccag
agagtgcaagtgtactgtgatatgaccacggatggaggcggatggattgtgtttcagaga
cggcagaatgggctgacagattttttccggaagtgggcagattatcgtattggctttgga
aacttagaggatgagttctggcttggactagacaatatgcacaagatcacatcacagggg
cgctatgaattgcggatagatatgagagacggccaggaaacagccttcgcatattatgac
aagttctccattggagatgccaggagcctgtacaagcttcggataggggactacaatggc
accgctggggattcactcacatatcatcaagggcgcccattttccaccagagacagagac
aacgatgttgccgtcacaaactgtgccatgtcatacaaaggggcctggtggtataagaac
tgtcacaggactaacctcaacggcaagtatggcgagtcccgacacagccagggtattaac
tggtaccactggaaaggacacgagttctccataccctttgtggaaatgaagatgaggccc
tacaaccatcgcaacacgctggggaggaagcggcggtccctgcagctgtga
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integrated database retrieval system
