Podarcis raffonei (Aeolian wall lizard): 128415417
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Entry
128415417 CDS
T09310
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128415417 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
praf00536
]
128415417 (COL11A1)
Glycosaminoglycan binding proteins [BR:
praf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128415417 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
128415417
NCBI-ProteinID:
XP_053247567
LinkDB
All DBs
Position
6:22322990..22578965
Genome browser
AA seq
1868 aa
AA seq
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METRRTWSTRWKTKRWFWDSAWPALLVAWMLLLEAAEVRGAEPVDVLKALEFHNSPEGIS
KTAGICINRRNSKGSDVAYRVSKNAQLSAPTKQLYPGGNFPEDFSILFTVKPKKGIQSFL
FSVYNEQGIQQVGVEVGRSPVFLYEDQNGKPAPEDYPLFRTVNIADGKWHRVAISVEKKS
VTLIVDCKKKTTKPLGRSDRAIVDTNGITVFGTRILDEEVFEGDIQQLLIVGDPRAAYDY
CEHYSPDCGSPVPNAPQAQEPQVDEYGTEDLIEYDYDYGDPDYKDYKDLDSVTEGPPLYD
EIVTQTEKKKKAPKKKRTVAANSKSNSPKFTLKKYESFSSKKKKSYQASAKSKLGANIVD
EYNEYNVAETDYGTSEGYQTETPSRTTGPNEQNPVEEVFAEEYVTGEEYNSETKKTEETD
YGNRGVDHSESEVVVDGEVGEYDFYEYKEYEEKPTNPANEEFGPGVPAETDITETSVNGH
GAYGEKGQKGEAAVIEPGMLIEGPPGPPGPPGLMGPSGTQGPTGPPGDPGDRGPPGRPGL
PGADGLAGPPGTMLMLPFRFGGGGGDKGPAISAQEAQAQAILQQARIAMRGPPGPMGLTG
RPGPVGGPGGSGAKGDSGDPGPQGPRGIQGPAGLPGKPGKRGRPGADGARGMPGEPGSKG
DRGFDGLPGLPGEKGNRGDRGPQGSPGSPGEDGMRGEDGEVGPRGLPGEAGPRGLLGPRG
TPGPPGQPGISGIDGPQGPKGNLGPQGEPGPPGQQGITGPQGLPGPQGPIGVPGEKGPPG
KPGLAGLAGADGPPGHPGKEGQSGEKGSLGPPGPQGPIGYPGPRGVKGADGVRGLKGGKG
EKGEDGFPGFKGDMGLKGDRGEVGPLGPRGEDGPEGPKGRSGPTGDPGGAGQAGEKGKLG
VPGLPGYPGRQGPKGSTGFPGFPGSNGEKGARGLHGKPGPRGQRGPTGPRGSRGPRGPTG
KPGPKGTAGSDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQG
KTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISG
KDGPPGLRGFPGERGLPGAQGGAGLKGGEGPQGPPGPIGSPGERGPAGTAGPIGLPGRPG
PQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKG
SKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGPRGFPGPPGPIG
LQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGPQGPPGSVGSVGGVGDKGEPG
EAGNPGPPGEAGTGGPKGERGEKGEAGPPGAAGPAGIKGPPGDDGPKGNPGPVGFPGDPG
PPGEPGPAGTDGTGGEKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKG
AKGEPGSEGAPGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGPMGPPG
LPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGATGAKGDGGIPGAAGPLG
PPGPPGLPGPQGPKGSKGSTGPGGQKGDGGLPGPPGPPGPPGEVIQPLPIQSPKKTRRSS
DAMMSDAADSILDYTDGMEEIFGSLNSLKQDIEHMKYPMGTQNNPARTCKDLQLCHPDFP
DGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKENPGTWFSEFKRG
KLLSYVDAEGNSINMVQMTFLKLLSASARQNFTYNCHQSVAWHDVSSDSYDKALRFLGSN
DEEMSYDNNPYIKVLHDGCATRKGYAKTVLEIDTPKIDQVPIFDVMINDFGDQNQKFGFE
IGPVCFLG
NT seq
5607 nt
NT seq
+upstream
nt +downstream
nt
atggagacgaggcggacatggtccacaaggtggaaaacgaaacggtggttctgggactcc
gcttggcccgcgctactcgtcgcttggatgctcctgctggaggcggcggaggtcagggga
gctgaaccagtcgacgtgctcaaagcattagagtttcacaattcaccagaaggaatatca
aaaacagcaggaatttgcataaacagaaggaattccaaaggatcagatgttgcctacaga
gtttcaaaaaacgcacaactcagtgctccaaccaaacaattgtacccaggtggaaacttc
cctgaagacttttcgatactatttacagtgaaacctaaaaaagggatccagtcctttctt
ttttctgtctacaacgaacaaggcatccagcaagttggtgttgaggtgggcagatcgcct
gtcttcctgtatgaggatcaaaatgggaagcctgcgccggaagattatcccctcttcaga
acggtcaacattgctgatggaaagtggcatcgggtagccattagtgtggagaagaaatcc
gtcactctgattgtggactgtaagaagaaaaccacgaaaccacttggcaggagtgaccga
gcaattgttgacaccaatggcatcacagtctttggaacaaggattcttgatgaggaagtt
tttgagggtgatatccagcagctgttgattgtcggcgatcccagagcagcctatgactat
tgtgaacattatagcccagactgtggttcccctgtgcccaatgctcctcaagctcaggaa
cctcaggttgatgagtatggaactgaagatttaattgaatatgactatgactatggagat
ccagattataaagattataaagaccttgactctgtaacagagggacccccactgtacgac
gagattgtcacacagactgagaaaaagaaaaaagccccaaagaagaagaggacagtggct
gctaactcaaagagcaactccccaaagttcacactcaaaaaatatgaatcattttcatcc
aagaagaagaaaagctatcaagcctcagcaaaaagcaaactaggggccaacattgtcgat
gaatataatgaatataatgtggctgaaactgactatgggacctctgagggctaccagact
gagactccaagccgaacgacgggaccaaatgagcaaaatcctgttgaagaagtatttgct
gaagaatacgtaacaggagaggagtataactctgagactaaaaaaactgaggaaacagat
tatggaaacagaggagtagaccacagtgaatctgaagttgtggtagatggagaagtaggc
gaatatgatttttatgaatataaagaatatgaagagaagccaaccaaccctgctaacgag
gagtttgggcctggtgttccagcagagaccgatatcacagaaacaagcgtgaatggccat
ggagcctatggggaaaaaggacagaagggcgaagcagctgtgattgaacctgggatgctt
attgaaggaccaccaggacctccaggacctccgggtcttatgggtccctcaggaacacaa
ggccccactggacctcctggtgacccaggcgataggggcccacctggacgtcctggtctc
ccaggagctgatggtttagctggacctccaggtaccatgttaatgttaccgttccgcttt
ggtggcggtggcggcgacaaaggcccagccatctcagcacaggaagctcaagcacaagct
attcttcagcaagccaggattgccatgaggggacctccaggccctatgggactcactgga
agaccaggtcctgtgggtggtcctggtggttcaggagccaaaggtgacagtggagaccca
ggtcctcagggtcctcggggtatacaaggtccagctggtttgcctgggaaacctggcaaa
aggggtcgtccaggtgcagatggagccagagggatgccaggggaacctggttccaagggt
gacagaggttttgatggccttcctggtctacctggtgaaaaaggtaacaggggagatcgt
gggccacaaggatctcctggttctcccggtgaagatggaatgagaggcgaagatggcgaa
gttggaccaagaggtctcccaggtgaagctggtccacgagggttgctgggaccaagagga
acacccggtccaccaggacagcccggaatctcaggtattgatggcccacaaggaccaaaa
ggaaacttgggtcctcaaggtgaaccaggaccccctgggcaacaaggaatcacaggtcca
caagggcttccaggtccacaaggcccaattggcgttcctggtgaaaaaggacctccgggc
aagcctggccttgcaggacttgctggtgctgatggccctcccggtcacccaggcaaagaa
ggacagtcgggagagaaaggttccttggggcctccaggtcctcaaggcccaattgggtat
cccggcccccgtggtgtaaagggcgctgacggtgtccgcggtctcaaaggtggcaaaggt
gaaaagggtgaagacggtttccctggatttaaaggtgatatgggtcttaaaggtgacaga
ggtgaagttggccctcttggtccacgaggagaagatggccctgaaggtcccaaaggccgt
tctggcccaacaggagacccaggtggggctggtcaagctggagaaaagggtaaacttggt
gttcccggattaccaggatatccaggaagacaaggtccaaagggctcaactgggttccct
ggatttccgggttccaacggagagaaaggcgcaaggggcttgcacggaaaacctggccca
aggggacagcgaggaccaactggaccacgtgggtcaagaggcccaagaggcccaactggg
aaacctggccccaagggcacggctggcagtgacggaccccctggcccaccaggtgaaagg
ggcccacaaggaccccaggggcctgttggatttcctggaccaaagggacctcctggtccg
ccagggaaggatggcttgcccggacacccagggcagaggggtgaaactggtttccaaggc
aagactggccccccgggtcctggtggcgtggttggacctcagggccccactggcgagact
ggcccaataggtgagagaggtcatcctggtcctccaggcccaccaggtgaacaaggtctt
ccaggggctgctgggaaagaaggtgctaagggtgatccaggtcctcagggaatctctggg
aaagatggacctccaggactccgtggtttcccaggtgaaagaggcctgccaggagctcag
ggtggagctggtctgaaaggaggagaaggtccacaaggtccaccgggtcccattggttca
cctggtgaacgtggtccggcaggtactgctggcccaattggtttgcctggacgtcctggt
ccccagggtcctcctgggccagcaggagaaaagggagctccgggtgaaaaaggtccccaa
ggcccagccggacgtgatggagtacaagggcctgtaggccttcctggccctgctggtcca
gctggttctcctggagaagatggtgacaagggagaaatcggagaaccaggtcagaaaggg
agcaaaggtgacaaaggagaaaatggtcctcctggaccaccaggtcttcaaggtcccgtc
ggagctcctggtatagctgggggtgatggagaacctggtccaagaggacagcaagggatg
tttgggcaaaaaggcgatgaaggcccacgaggcttccctggtcctccaggtcccattggt
cttcagggtcttcctggcccaccaggggaaaaaggtgaaaatggtgatgttggtccaatg
ggtcctcctggtccccctggcccaagaggtccgcagggtccaagtggagctgatggtcct
caaggtccaccaggatctgttggctctgttggaggtgttggtgacaagggtgaacccgga
gaagctggtaaccctggccctcctggagaagctggaacagggggtccaaaaggggaaagg
ggtgaaaagggtgaggctggaccaccaggggcagctggaccagcaggtattaaaggacct
ccaggtgatgacggacctaaaggtaacccgggtcctgttggctttcctggtgaccctggt
ccccctggtgaacctgggcctgctggaactgatggtacaggaggggagaaaggtgaagat
ggtgacccaggccaacccggtccaccaggtccttcaggtgaagcaggaccccctggccct
cctgggaagagaggacctccaggagcagctggtgccgaaggaaggcagggtgaaaaagga
gcaaagggggaacctggttcagaaggtgctccaggaaaaacaggcccagttggacctcag
ggcccttcagggaaacctggcccagaaggtcttcggggtattcctggccccgtgggagaa
caaggtctacctggagcaccaggtcaagatggtcctccaggtcccatgggtccacctggc
ttgcctggcttgaaaggagatccaggttccaagggtgaaaagggccatcctggtttgatt
ggtctgatcggacctccaggagaacagggagaaaagggtgacaggggtctgccgggcccc
cagggagccactggagcaaaaggagatggaggaattcctggtgctgctggcccacttggt
cctcctggtccacctggcttacctggaccccaaggacccaaaggctctaaaggttcaaca
ggtcctggtggtcagaagggtgatggtggtttacctggacctcctggacctcctggccct
ccgggtgaggtgattcaacctttgccgatccagtcacccaaaaagaccagaagatcttca
gatgccatgatgtctgatgcagctgacagcatcctggattacaccgacggcatggaggag
atctttggctcacttaactctctgaagcaggacattgagcacatgaaatacccaatgggg
actcagaacaatccagcccgaacatgcaaggatctccagctttgtcacccagacttccca
gatggagagtattggattgatcctaaccagggctgttccggggactctttcaaagtgtac
tgtaatttcacagcaggaggagaaacttgcatatatccagataagaagtcagaaggagta
aggatttcatcatggccaaaggaaaatccaggaacctggtttagtgaatttaagagaggc
aagctgctttcctacgtggatgctgaaggcaattccattaatatggtccaaatgacattc
cttaaactactgagtgcctctgcccgacagaacttcacttataactgccatcagtcagtg
gcatggcatgacgtgtcttctgacagctatgacaaagcactgaggttcttaggctcaaac
gatgaagagatgtcttatgacaacaatccttacatcaaagttcttcacgatggctgtgcg
acacgaaaaggctatgcaaagactgttcttgaaattgatactcccaaaattgaccaagtg
cctatttttgatgtgatgattaatgactttggtgatcagaatcagaagtttggatttgaa
attggccccgtctgtttccttggttaa
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integrated database retrieval system
