Podarcis raffonei (Aeolian wall lizard): 128415432
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Entry
128415432 CDS
T09310
Symbol
VCAM1
Name
(RefSeq) vascular cell adhesion protein 1
KO
K06527
vascular cell adhesion molecule 1
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
128415432 (VCAM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
praf04515
]
128415432 (VCAM1)
04090 CD molecules [BR:
praf04090
]
128415432 (VCAM1)
04091 Lectins [BR:
praf04091
]
128415432 (VCAM1)
Cell adhesion molecules [BR:
praf04515
]
Immunoglobulin superfamily
VCAM
128415432 (VCAM1)
CD molecules [BR:
praf04090
]
Proteins
128415432 (VCAM1)
Lectins [BR:
praf04091
]
I-type lectins (Siglecs)
128415432 (VCAM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
V-set
C2-set
C2-set_2
ICAM1_3_5_D2
Izumo-Ig
C1-set
Ig_4
Ig_5
C2-set_3
Ig_6
Motif
Other DBs
NCBI-GeneID:
128415432
NCBI-ProteinID:
XP_053247594
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All DBs
Position
6:23575217..23585520
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AA seq
564 aa
AA seq
DB search
MSRGTLSALTALLLTAVLTSKAFEVEDIVPGHQVAAQIGEDLELWCNTTGCDRPTFFWRT
QLDFPLGANVSQQGSNSVLTMKVGFENEHEYLCNTRCGEVRKQRRVQIDIYSFPSDPVIE
ISQPLILGEPATITCRVPKVYPADRLEIYLEIEGEFLRMTEFSREPLIKSVETKSASITF
TPSEEDNGKEITCRAELPIDEMEFEPKARKTTQILHVNYAPRLPDFSILPAGSVKEGESV
TLQCLAKGNPAAKVTIRRKSANEKVVLDSKDGVVHIPRVTPDDAGDYECEAENEFGEVKR
AETLSVEYGPRNTRIVSVPSSTVKEGDNVTLTCSTYGSPTPKVFWKKQLLNGGSLLILEG
ATLTIKAVQAEAMGLYECEAVNVAGKESRTVEIIVKVLSPSTPEMSHSTPELSPTASELS
PSTPELSPSTPALTDQTETVTEVEDFAIKSTTYNTQHQVTDSKGNDPEKETSLTTNGRIF
TTYTTSRNNTITYAVKVDDVGNSTEEDKIVKERIEEPDYLTPVIIAVSSLATAAGPMAAL
LIYIFRKAKINRSYSLVNSLKPKV
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagaggaactttgtcagcgttgacggcgcttttacttacggctgtcctaacttct
aaagcttttgaggtggaggacattgtgcccggccaccaagttgccgcacagatcggtgaa
gacctggagctatggtgcaacacaactggctgtgatcgccccacttttttctggaggact
cagcttgacttcccgttaggtgcaaatgtgagccaacagggaagcaactcagtcttaacg
atgaaggttggctttgaaaacgagcacgaatatctctgcaacactagatgcggggaggtc
aggaaacaacggagggtgcaaattgacatttactcattccccagtgatcctgttatagag
atcagccagccgctgattctgggggaaccagccactatcacctgccgtgttcctaaagtg
tatcccgctgaccggctggagatctacttggagatcgaaggggagtttcttcggatgaca
gagttttcccgagaaccccttatcaaatctgtcgagacgaaaagtgcgagcattacgttt
actcccagtgaagaagataatgggaaagaaatcacatgcagagccgaactgccaattgat
gagatggagtttgagcccaaggcgaggaaaacaacacaaatactgcatgttaactatgcc
cccagacttccagacttctccatccttcctgctgggtcagttaaggaaggagaaagtgtt
actttgcagtgccttgcaaagggcaaccctgctgccaaggtcaccataaggaggaaatca
gccaatgaaaaagtggtccttgatagcaaggatggagtcgtccacatccctagagtgact
cctgatgatgcaggagactacgagtgtgaagcagagaatgagtttggggaagtcaaaagg
gcagaaacactaagtgtggaatatggaccaaggaatacaaggattgtctctgtgccttct
agcacagtgaaggaaggggacaacgtaactctgacttgttccacctatgggagtcccacc
ccaaaggttttctggaaaaagcagcttttgaacggaggctctctgctcattttggaaggt
gctactttaaccataaaagccgtacaggcagaagctatgggactttatgagtgtgaagca
gttaacgtggctgggaaagaaagcagaactgtggaaataattgttaaagtcttgtcaccc
tctactccagaaatgtcacattctactccagaattgtcaccaactgcttcagaattgtca
ccctccactccagaattgtcaccctccactccagcattaacagatcaaactgaaactgtt
actgaggtggaagatttcgccattaagagcacaacctataatactcaacatcaagtgact
gacagcaaagggaacgatccggaaaaggaaacttccctcaccacaaacggaagaatcttt
acaacgtatacaacatccagaaacaatacaatcacatacgcagtgaaagttgatgatgtt
ggaaacagtacagaagaggacaaaatagtcaaagagagaatagaagagccagattacttg
actcctgtgatcattgctgtttcttcgttagcaacggcggctggacccatggcagcccta
ttgatttacatttttcgaaaggcaaaaatcaacagatcctacagcctggtgaactccctg
aaaccaaaagtataa
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