Podarcis raffonei (Aeolian wall lizard): 128415481
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Entry
128415481 CDS
T09310
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
VWA_2
VWA_3
CBM_4_9
DUF4959
DUF4998
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
128415481
NCBI-ProteinID:
XP_053247695
LinkDB
All DBs
Position
6:91820345..91937995
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AA seq
1454 aa
AA seq
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MLSFLGSNRLKLTVLSEDRLQMKWKETEGNANGYKVRVKPMAGDSEQEVMLKTKTAKATV
GGLSPTKEYTLQIYILNGSQEALFVKRKFVIEELKNLSQARSNRRQPTGAPEKAEAPLET
PAAEYTLETEATSPPARSDTPAVIRREEPEKRREKAISKGASEYLPNAELTVMSTAPTTL
KTTLSSLAEFEMDYLAREKTSRESSRRVSHFHCDTSAMIDIVLLVDGSWSIGRNNFGLIR
GFLAGLVAPFNIAQDKIRVALSQYSSDPRTEWELNTYSTRDEVLEALRSLQYKGGNTFTG
LALTHVLEQNLRPEAGARPEAPKLIILLTDGKSQDDASPSAQTLKDMGIEIFAVGVKNAD
EAELRHVASEPLELTVYNVLDFPLLSSLASRLTRVLCSRIKEMNKEENTGDDPLKAILVN
SGAHLSPTNLAIKEVTSRSIRLIWNPPLIPPKKYRVVYYPSRGGIPKEVVLDGAASAVQL
LNLTSHTEYLVSVFPIYENAVGDGLRGITSTLPLSAPGSLRASEISHNSIRLSWEPADGA
SQYLVLCSSAPNGAEDVTREIKVEQPDVLLEGLSPNTEYSLAVYAMYGEDASDPASVQET
TLALSPPQFLHFSNISHASVRVNWEAASHAVKKHRVTYISSRGSNTGEVDVPGNASFAAL
KPLSSLTQYFVSVISVYDEGDSFPVTANVTTLKVPPPSHLKVTELSQGEVQLEWEASAAS
DVVVYQIKWNVIGEKRAQELSVAGNLASSILPGLKKNTEYQISIWAYYRDGARSDTISVR
HKITAKNPPSNLFVDSETPSSFQVHWDPPEGAVQHYRLSYAPESGTKHQETITVSGRSRS
ITLHSLLPNRLYMVTVSAVYLTGESDPVSTIGQTASLLARLPTIRGSYPFKAEDCPVLDS
MEGSLQGYDMMEVFGLMEKEYASIKGVAMEPYIFLGIHTYTLFRDIQLTRKTSEVFPSGM
PTEYTITFLLRLLPESPREAFAVWQITDEDFQPVLGIILDPNKKSLIYFHRDYEADVEEV
TFDQQEVKKIFYGSFHKVHLSVSRSRVRLYIDCKKTSEKLLGTSESISTAGFVMLGKLTR
TRGPRSGSAAFQLQSLQIVCSSLWPEEDRCCDVPAMRDEEVCPSFLPSCSCTSEIPGLPG
PPGPPGSPGRRGPQGEQGEPGPKGEPGPPGQVGPEGPGGHQGTPGTQGKTVQGPIGPPGI
KGDKGDSGSPGMQGLMGPQGAPGKDGIQGSKGVRGLEGTAGPPGPPGPRGFQGVAGARGT
SGEKGPPGEVGPTGLPGPKGERGEKGEAQSLATIYHLVNQACERLIQSHVLKFDSFVHEH
SQKPVPIWEDKLKPGEPGPPGLPGPPGMKGERGEAGMPGQPGRDGYPGERGASGPKGEKG
SPGTNEEGSQGPRGRTGPVGEEMLGKQGSKGSPGSTGPPGFPGARGQPGEPGHGGGCVLS
GCYEESTIDAGLIP
NT seq
4365 nt
NT seq
+upstream
nt +downstream
nt
atgctttccttcctaggctcaaaccggttgaaactgactgtcctctcagaagacaggttg
cagatgaaatggaaagaaacggaaggaaatgccaacggatacaaagttcgcgtgaagccc
atggcaggtgactctgagcaggaagtcatgctgaaaaccaagaccgccaaagcgacggtg
ggagggttgagtcccacgaaagagtataccttgcagatctacatcctcaacggttctcag
gaggccctctttgtcaagaggaaatttgtgattgaggagctgaagaacctctcccaagcc
agaagtaacaggaggcaaccaacaggcgctccagaaaaggcagaggcgcctttagagacc
ccagcagctgaatacaccctggagactgaggccacttcaccacctgcccgcagtgacaca
ccagccgtgataagaagggaagagccagagaagaggcgggaaaaagccatttccaaaggg
gcgagcgaatatttgccaaatgccgagctgactgtgatgtcaacggcaccaacaaccctg
aagacgactctgtcaagcctagcagaatttgaaatggactatctggcccgagagaaaaca
tccagagaaagctcacggagagtttctcactttcattgcgacacctctgcaatgatcgac
atcgtcctgctcgttgacggatcttggagcatcgggagaaacaactttgggctcatccga
ggattcctggctggtttggttgcacctttcaacatcgctcaggacaagataagagtggcc
ttatcccagtacagcagtgacccgcgtacagaatgggaactgaatacatactccacccgg
gatgaggtgttagaggccctgaggagcttgcagtataaaggaggcaacacattcacagga
ttggcgctgacgcatgtcctggaacagaacctgaggcctgaagctggtgcgcggccagaa
gcccccaagctgatcattctcttgactgatggcaaatctcaggatgatgccagtccgtcc
gcccagaccttgaaggatatgggaatagagatatttgctgttggggtgaaaaatgcagac
gaggcagagttgcgccatgtggcctccgaacctttggaactgacggtgtacaatgtgctg
gatttccctttgctcagctctctggccagccggctcacccgggtcttgtgttcccggatc
aaggagatgaataaggaagagaacacaggtgatgaccctctcaaagccatactggtgaat
agtggagcccacctgagcccaaccaatcttgctataaaggaggtaacatccagaagtata
cgcctcatctggaacccccctctgataccacctaaaaaatatagggtggtctattacccc
tctaggggtgggattcccaaagaggttgttttagatggggcagcctcggccgtgcagctc
ctcaacttgacatcccacacagaatatctggtttcagtgtttcctatttatgagaacgcg
gttggagatggactcagaggcatcacctcaacattgcctctctctgcccctgggtccctc
agagcttctgaaatcagccacaacagcatacgactgagctgggagccagcagatggagct
agccagtatctggttctttgctcctcagcacccaatggagcagaagatgttaccagagag
attaaggtagaacagcctgacgttcttcttgagggcttgtcccccaacactgaatattcg
ctggccgtttacgcaatgtatggagaagatgctagcgatccggcgagtgtacaggaaacc
actttggccctgagccctccacagttcttgcatttctccaacatcagccatgcctcggtc
agggtcaattgggaggcggcttcacatgctgtgaaaaagcaccgcgtaacgtacatctcc
agcagggggagcaacactggagaggtggacgttcctggcaacgcttcctttgctgcgctg
aagcctctctcgtcgttgacgcagtatttcgtcagcgtgatttccgtttatgatgaaggg
gactccttccctgtaacggccaacgtcaccacattaaaggtgcccccaccaagccacctg
aaagtcaccgagctctcgcaaggggaggtccagctcgaatgggaagcatctgcagcgtct
gacgtggttgtctaccagatcaaatggaacgtgattggggaaaagagggcacaggagctg
tctgttgctggaaatttggcgtcttctattcttcctggcctgaaaaagaacaccgagtac
cagatctcaatatgggcgtattacagagatggggctcggagcgataccatctctgtccgg
cacaagatcacggccaagaatccacccagcaacctctttgtggactcagaaacacccagc
agcttccaggtccactgggatcctccagagggcgctgtgcagcactacagactcagctat
gctcccgagagtggaaccaagcaccaggaaacgataacagtttctgggaggagcaggtca
atcactctccactcactgcttcctaatcgattgtacatggtgacggtttccgcagtctat
ctcacaggagaaagtgaccctgtatcgaccataggccagacagcttctcttttggccaga
ctgcccacaataagaggatcttaccctttcaaagctgaagactgccctgtcctggactcc
atggaaggttctctgcaaggttatgatatgatggaggtgtttggactgatggaaaaggag
tacgcctccatcaaaggagttgctatggaaccctacatcttcctaggaatccacacttac
actcttttcagggatatccagctgacccggaagacaagcgaagtgtttccttctgggatg
ccaaccgaatacactatcactttcctcctccggctcctgccagaaagccctcgggaagcc
tttgctgtgtggcagataacagatgaggacttccagcctgtacttggcatcatacttgac
cccaacaagaaatccttgatatatttccaccgtgactatgaagctgatgtcgaggaagtc
acctttgaccagcaggaagtgaagaagatattctacggcagttttcacaaggtgcaccta
tctgtgagccgttccagggtcaggctctatatcgactgcaagaagacatcggagaaattg
cttggaacttcggagagcatttcgacggctggctttgtcatgctcgggaaactcaccagg
acgcgagggccgcggagcgggtcagcagcgttccagctgcagtcactgcagattgtgtgc
agcagtttgtggcctgaagaggacagatgttgtgatgttccagcaatgagagatgaagag
gtctgccctagcttcctcccgtcttgcagctgcacttctgagatcccaggcctcccaggg
cctccagggcctccgggtagtcctggaaggagaggacctcagggcgaacaaggcgagcca
ggccccaagggtgagccaggcccacctgggcaagttgggccagaaggtccgggaggacac
caagggacaccaggcacccaagggaagactgtgcagggtcccatagggccaccaggtatt
aaaggagacaaaggagacagtggaagtccagggatgcagggtttgatgggtcctcaagga
gctccagggaaagatgggattcaaggatcaaagggtgttcgaggcctggaaggcacggct
ggacctcctggaccaccaggaccaaggggttttcaaggcgtagcaggagcccgaggcacc
agtggggagaaggggcccccaggagaagttggcccgacggggctgcctggtccaaaagga
gaaaggggagagaagggtgaagcccagtctttagccacaatctatcatctggttaatcag
gcttgtgagcgcctaattcagtctcacgtgttgaagtttgactcattcgtccatgaacat
tcacagaagccagttcccatttgggaagataagctgaagcctggagaacctggtccgccc
ggtcttcctgggcctcctggcatgaaaggagagagaggagaagctgggatgcctggacag
cccggcagagatggatatccaggagaaagaggtgcctctggacccaaaggggagaaaggt
tctcctggaacaaatgaggaaggttctcaaggtcctagaggtcgaacaggtccagtagga
gaagaaatgcttggcaaacaaggctcaaagggatcccctggcagcactgggccccctggg
tttcctggagcaagaggtcaaccaggagagcctggccatggaggcggttgtgtcctttca
gggtgctatgaagagagtacaatagatgcagggctgatcccctaa
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