Podarcis raffonei (Aeolian wall lizard): 128416554
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Entry
128416554 CDS
T09310
Symbol
COL9A3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf04510
Focal adhesion
praf04512
ECM-receptor interaction
praf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128416554 (COL9A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128416554 (COL9A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128416554 (COL9A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
praf00535
]
128416554 (COL9A3)
Proteoglycans [BR:
praf00535
]
Extracellular matrix (ECM) proteoglycans
Others
128416554 (COL9A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128416554
NCBI-ProteinID:
XP_053250444
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All DBs
Position
6:90865868..90934435
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AA seq
675 aa
AA seq
DB search
MAGFSALGLLLLSQLLASSSAQRPGPRGPPGPRGPPGTSGKDGIDGEPGPPGLPGPPGPK
GAPGKPGKAGNAGLPGLPGVDGLTGSDGPPGPVGPPGDRGAIGPPGPAGPAGKGLPGPPG
PPGPSGLPGGNGYPGPPGPAGLPGFAGPPGPPGPPGIPGVMPDGNGDLQCPAVCPPGPPG
PPGIPGFKGHTGYKGEPGEVGKDGEKGSPGPPGPAGPPGTVGLQGPRGLRGLIGPVGPVG
DRGTIGFRGPPGLPGPPGKAGPRGDRGPQGFRGPKGDTGRPGPKGTPGTAGPLGEPGMPG
KDGRDGTHGLDGEKGDAARFGVPGEKGPNGLPGLPGRPGTKGEKGQPGVPGEMGGTGPSG
EPGIPGDRGIPGERGDPGPRGSSGPIGLQGPMGAPGVRGFQGRKGSSGEPGLPGPTGIRG
GSGERGPGGVSGPKGNQGIAGADGLPGDKGELGPFGPPGQKGEAGSRGELGPKGVQGPNG
TVGAPGIPGHPGKLGLQGEQGIPGITGKPGPPGKEASEQHIRELCGGMIREQIAQLAANL
RKPLAPGMTGRPGPAGPPGPPGATGIIGHPGARGPPGYRGPPGDLGDPGPRGDHGERGDK
GAMGKGVDGPDGDQGPQGPPGVPGTSKDGRDGSPGEPGLPGDPGRPGAIGVQGTPGVCDT
SACMGAVAGGKSKKS
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggctgggttctcagccctcggattacttcttctttctcagcttttggcctcctcctca
gctcagaggccaggaccacggggacctcctggaccacgaggacctcctggaacatctggc
aaagatggcatagatggagagcctggtcctcctggtttgcctggtccaccagggccaaaa
ggagcaccagggaagcctgggaaagcaggaaatgccggcttgcctggccttccgggagta
gatggtttaacaggatccgatggcccacctggaccagtagggccaccaggggacagaggc
gccataggacctccggggccagctggaccagccggcaaaggacttccagggcctccggga
cctccaggccccagtgggctcccaggtggaaacggatacccaggaccacccggaccagct
ggacttcctggttttgctggaccaccgggacccccaggaccaccaggtattcctggagtt
atgcctgacggcaatggagaccttcagtgtccagctgtctgtccacctggccctccagga
ccaccagggataccaggattcaagggacatacgggttataaaggcgaacctggagaagta
ggcaaagatggcgagaagggttcaccaggacccccaggtcctgcaggacctccaggaact
gttggcttgcagggaccacgagggttaagaggtctgattggccccgtggggcctgttgga
gacaggggaacaatcggtttcagaggacctcccggccttccgggccccccaggaaaagcg
gggcctcgtggagatcggggtcctcagggctttcggggacccaaaggcgatactggcaga
ccaggacccaaaggaactccaggaactgctggacccttaggagaacctggcatgcctgga
aaagatggaagagatgggactcatggactcgatggtgagaagggtgatgccgctcgcttt
ggtgttcctggagaaaagggtccaaatggacttcctggactacctggaagacctggaact
aaaggagaaaagggtcaaccaggcgttccgggagagatgggaggaaccggtccttcagga
gagccaggtatacctggagatcgtgggatccctggggagagaggcgaccctggtccaagg
ggatcttctggaccaattggtttgcaaggccccatgggagcaccaggtgtgagagggttt
cagggtcgtaaagggtccagtggggagcctggccttcctggtcccaccggaatccgtggc
gggtctggtgaaaggggccctggtggagtttctggaccgaaaggtaaccagggcatcgct
ggagcagatgggcttccgggagacaaaggagagttgggtcctttcggccctcctgggcaa
aagggggaggcaggaagcaggggcgagctgggccccaaaggagttcaaggtcccaatgga
acagtgggagctccaggaattccagggcacccgggcaagctgggtttgcaaggcgaacaa
gggatcccagggatcactggcaagccaggtcctccaggcaaggaagccagtgagcaacac
ataagagaactctgtggtggaatgatccgtgagcaaatcgcacagttagctgctaacttg
aggaagcccctcgctcctggaatgacggggcggcccgggcctgccggtcccccaggccct
cctggggcaacgggaattattgggcaccctggagctcgtggcccacccggataccgagga
ccaccaggagacctaggagatcctggtcctagaggtgaccatggcgagaggggagacaaa
ggtgccatggggaaaggtgttgacggaccagatggggatcaaggacctcaaggtccgccg
ggtgtcccagggactagtaaagatggccgggatggctctcctggtgaacctgggttgcca
ggggatcctggaagaccaggtgcaattggagtccaaggaactccaggagtctgtgataca
tctgcctgcatgggagctgtcgctggaggaaaatccaaaaagtcataa
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