Podarcis raffonei (Aeolian wall lizard): 128417358
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Entry
128417358 CDS
T09310
Symbol
TRPA1
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1 isoform X1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
praf04040
]
128417358 (TRPA1)
Ion channels [BR:
praf04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
128417358 (TRPA1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
PKD_channel
ANK_LRRK2
Motif
Other DBs
NCBI-GeneID:
128417358
NCBI-ProteinID:
XP_053251840
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Position
7:32956081..32987735
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AA seq
1280 aa
AA seq
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MVLLVPEGKQQQQHKSVCLSGDVATSTQLRSPRRTAERGPNPRLRRQLPPSAVEPRSSGG
RFSLARRAHRRDPSGRRRPCSGRSPSTPEAGISSTSTPLAFPHASSSCSRLRLTTPHSRL
LFCGLAHLARPSSSCSCSLGLGFPLHTWLLLVSPTGRCGRRTGSETMRRAFLKLFQSGQS
KQDTCYEGVVCEADAASVASQDVFKVISDGSTCRLRSFIKKNRDGLKKLDELNATPLHHA
AAGGQLELMQMIIDGSSTEVLNVTDCSGNTPLHWATKKSQIGSVKLLLSKGANPNILNSS
MMAPLHLAVQCLHNELVKIFVEHSATDVNLEGESGNTPILLACYKDNTEALKLLIKNGAK
ICKANSLGCMPVHAAAFSGAKTCMEIIIKKGEELGYSPKNHINFTNNGKCSPLHLAVQSG
DLEMIKMCIEYGAQIDLKQSDKCTALHFAATQGATEILKLMMSSYAGDEPIVDALDGNKE
TLLHRAALFDHYDLAEYLISMGAKIDSVDVEGRTPLLLATYCASWKIVNLLLSKGANVEL
KDHLGRNFLHLTVLHPGGLKHLNEQFLKMKHIKDLITDEDNEGCTPLHYACRQGVPLSVN
SLLELNVSICCKSRDKKSPLHFAASYGRINTCQRLLRDMVDTRLLNEGDKKGMTPLHLAA
QNGHEKVVQFLLKKGALFLCDYKGWTALHHAAFGGYTRTMQIILNTNVKCTDKVDEEGNT
ALHLAAREGHAKAVRLLLDDSAKVLLNKNEASFLHEAIHNGRKDVVNTVILHKRWEETVV
TFSHHSSTNKCPLIEMVEYLPECLKLVLDNCITESSDDKASKDFCVEYNFRYLQCPLKLT
KKLKEDDDIVYEPLITLNAMVRHNRVELLSHPVCTEYLLMKWMAYGFRAHLMNLAVYCLG
LMPLTLLIIHIEPEGSSNRTVKAGPFENKRSYFTKVCMCLVFIMSLFGICKEIIQLFQQK
LKYLLDYSNLLDWTIYTTNIIFVSSLFIQLPVRLQWECGAIAIFLSWMNFLLYLQRFENY
GIYVVMFWEILRTLIRIIIVFFFLMLAFGLSFHVLLGSQETYGTPYLSVMQTFAMMLGDI
NYREAFLEPMLSDHLPYPFLSFAMLVIFSLLIPILLMNLLIGLAVGDIAEVQKFAALKRI
AMQVSLHTNLEKKLPYWFLSRVDQDSITVYPNRPRYCGFMSVFQYCFGCNDIAANTQNAD
TSLELEVLKQKYRLKDIAALMEKQHDLLKLVVQKMEIISEAEDEDTNDLFQHKFRKKQLE
HKNSKWDTVLKAVKCKPPEI
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atggtcttgctcgttcctgaggggaagcagcagcagcagcacaaaagcgtctgtctgagt
ggggacgtcgccacatcgacccaactgcgctccccacggcggacagccgagaggggcccc
aatcctcggctgaggcgccaacttcctccctcggcggtcgagcctcgttctagcggaggc
cgcttcagcctcgcgaggcgagcgcaccggcgagacccctcaggccgccgccgcccctgt
tctggccgctctccctcaactccggaggcgggaatctcttccacgagcactccgctcgcc
tttcctcacgcctcttcctcgtgcagccggctccgcctgacgacgccccattcgcgcctc
ctcttttgtgggttggcgcacctcgcccgtccctcctcctcctgctcctgctctctcggg
ctgggctttcccctgcacacatggctccttctggtgtctcccacaggtcgctgcgggaga
cggactggcagcgagaccatgaggcgcgccttcctgaagctgttccagtccgggcagagc
aagcaggacacctgctacgaaggggtcgtgtgcgaagcggacgccgcctcggtcgcctcg
caggatgtgtttaaggtgatctcagatggaagtacctgcagactacgaagtttcattaag
aagaatcgggatggtcttaagaaactggatgagctaaatgcgactccattgcatcatgct
gcagcaggaggtcaacttgagctaatgcaaatgattatagatggttcttcaactgaagtg
ctaaatgtgactgactgctctggaaacacaccactgcattgggccacgaaaaaatcccag
attggaagtgttaaattacttctcagcaaaggagctaacccaaacattcttaattccagt
atgatggctccacttcacttggctgtgcagtgccttcacaatgaattagttaagattttc
gtcgaacacagcgctacagatgtgaacctggaaggagagagtgggaacacgcccatatta
cttgcatgttataaagataatactgaagcactgaaacttctgataaaaaatggtgctaaa
atatgtaaagcaaacagtttaggatgtatgccagtccatgcagctgcattttctggtgca
aaaacatgcatggagattatcataaagaagggtgaagaattaggctattcccctaaaaat
cacatcaattttactaataatggaaagtgtagtcctcttcatctggcggttcaaagtgga
gacttagaaatgattaaaatgtgcattgaatatggagctcaaattgatttgaagcagagt
gacaaatgcacagctcttcattttgctgccacccaaggagctactgaaattcttaaactg
atgatgtcatcttatgcaggcgatgaacctattgttgacgcattagatggaaataaggaa
acattgcttcacagggctgcattgtttgatcactatgacttggcagaatatctgatatca
atgggagcaaaaatcgatagtgttgacgttgaaggccgaactccactactacttgctact
tattgtgcatcatggaaaattgtgaatttattactatcaaaaggagcaaatgtagaatta
aaagatcatcttggtcgtaattttttgcatctaacagttctacatcctggaggattaaaa
catctgaatgaacagtttttgaagatgaagcatattaaagatctcataacggatgaagat
aacgaagggtgcactcctctacattatgcatgcaggcagggggttcccctttcagtgaac
agcctcctcgaactgaacgtttccatctgttgtaaaagccgagataagaaatctcctttg
cattttgcagctagctatgggcgtatcaacacctgtcaacgactcctccgtgatatggta
gataccaggctcttgaacgaaggagataagaaagggatgactcccctgcacttggctgct
cagaatggtcatgagaaggtagtgcagtttctcttgaagaaaggtgccctctttctctgt
gattataaaggctggacagctttgcaccatgctgcatttggagggtatactcgcacaatg
cagataattttgaatactaatgtgaagtgcacagataaagtggatgaagaagggaacacg
gccctccatcttgctgccagagaaggccatgccaaagccgttagactgcttcttgatgac
agtgccaaagtactcttgaacaaaaacgaggcttcttttcttcacgaagccatacacaat
gggcggaaagatgtcgtaaacactgtcatcttacataaaagatgggaagagactgttgta
acattttctcaccattcaagtacaaataaatgtcctctaatagagatggttgaatatctt
cctgaatgtttgaaattagttttagacaattgcatcactgaatcatcagacgacaaggca
tccaaagacttctgtgttgaatataacttcagatatcttcagtgcccactgaagcttacc
aagaaattaaaagaagatgatgatattgtgtatgagccacttatcactcttaatgccatg
gtccgtcataatcgtgttgaactgctcagccatcctgtctgtacagaatatttactcatg
aaatggatggcctatgggtttcgagcacatctcatgaatctagctgtgtattgtcttggc
ttaatgcctctaacgctcctgatcatccacatagaaccagaggggtcttccaacagaact
gttaaagcagggccttttgagaataagagatcatacttcacaaaagtgtgcatgtgttta
gtttttatcatgagcttatttgggatctgcaaagaaataatacaactcttccaacagaaa
cttaagtatctcttggattattcgaatctcctcgactggacaatatatactacaaacatc
atttttgtatcatctttatttattcaacttccagttcgtttgcagtgggagtgtggtgca
attgctatattcttgtcttggatgaatttcttgctatatctgcaaagatttgagaattat
ggaatatacgttgtgatgttttgggaaattttgaggacgttgatccggatcatcattgtc
ttcttcttcttgatgttagcctttgggctcagcttccatgttcttctcggttcacaggaa
acatatggcactccatatctttctgtaatgcagacatttgccatgatgctaggagatatc
aattatcgtgaagctttccttgaaccaatgctttccgatcatctgccatatccgttcctg
agttttgcaatgcttgttatcttctctctccttattccaatccttcttatgaacttgttg
attggcttggctgttggtgacattgcagaggtacagaaatttgcagcactgaaaagaata
gcaatgcaggtcagtcttcacacaaatttggagaagaaactgccatactggtttctcagc
agagttgaccaggattcaatcactgtgtatcctaataggccaagatattgtggatttatg
agtgtgtttcaatattgctttggctgtaatgatatagcagcaaatacacagaatgctgac
acatctttggaactagaagtattgaaacagaagtacaggcttaaagatattgcagcactt
atggagaaacagcatgacctccttaaactggttgttcaaaaaatggaaatcatatctgag
gctgaggatgaagacacaaacgatctattccagcacaaatttaggaagaagcagttggaa
cataaaaacagtaaatgggatacagtattaaaggcagtgaaatgcaaacctcccgagatc
tag
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