Podarcis raffonei (Aeolian wall lizard): 128418024
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Entry
128418024 CDS
T09310
Name
(RefSeq) protocadherin beta-16-like isoform X1
KO
K16494
protocadherin beta
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
praf04515
]
128418024
Cell adhesion molecules [BR:
praf04515
]
Cadherins
Protocadherins
128418024
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
128418024
NCBI-ProteinID:
XP_053253374
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Position
7:complement(87188496..87306529)
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AA seq
858 aa
AA seq
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MPCISGGEAGRMEMHLKIRQVWSFSLYLCACIAVCESFRYLVPEEEKRGSLVANVLKDLR
VDAKELSARRARLVSKSSKQYFQLDPHSGDVTVKDKIDRESLCGQNEPCILLSEIVLEKP
LQLHRIEVEIEDVNDNAPKFSKNQFLLEIPEQTPVDIRFPLESAEDPDIGENAVQNYTLS
PNEHFRLDVQSHSDGTNYAELVLEKPLDREVNPQISLILSAVDGGIPKRTGTAQIIIDVL
DNNDNLPQFPQPEYKVKLKENSPLDTLVTKVEATDRDLGSNAHITYSFSQVPENVVRSFK
LNKYSGELTTAGTIDYEENTNYKINIRATDGGGLSAYCKVIVEIEDENDNAPEITITSIT
SPLPEDSPPDTVVALFSVTDVDSGDSGRTACTTEVNLPFVLKPTENNYYQLVTQQQLDRE
QASEYNITITATDRGSPRLTSTRILHVQISDVNDNPPVFEKPFYQMQLRENNIPGLLINS
VHAVDLDTAQNAKVTYSLLPGKVNDGPTSSYISINSETGNLYAIRSLDYEEVQDFQVTVR
AVDSGSPPLSSEVPIRVQVVDENDNAPFILYPLQNGTSPSNDLVPRGAETGYLVTKVVAV
DRDSAQNSWLSYQLLKATEPGLFTVGAQNGEVTTLRPVSNRDSFKQNLIVVVRDNGHPPQ
STSATLRILLVDGFSDPYLKSVALPKEETAEEEDPSLTMYLIICLAAISSIFLISVVAFV
VIKLQKREKFTGTYNSGANFPVGPDSQENCADPGAGSLSQAYNYEVCLAGGSLNSEFRFL
RPLFPVFSVEPPNTQLNPRSSNDSEGVPSHAGESQNIIQARASLSEDAAPRSGAPGCIVN
QATGANINCSQNDWLTYQ
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgccttgcatttcaggaggagaggctgggagaatggaaatgcacctcaagatcaggcaa
gtttggtctttttccctgtatctctgtgcatgcatagcagtgtgtgagtctttccgctat
ttagtgccagaggaggagaaaagggggtctctggtagcgaatgtgctgaaggatttgaga
gtggatgcaaaggagctgtctgctcggagagcccggctggtttctaagagctccaagcag
tatttccagctggatcctcattctggggatgtgacagtaaaggataaaatagatcgggag
tccctgtgtggtcagaatgaaccatgtattctactgtctgaaattgtgctggaaaagcca
ttgcagctgcacagaattgaagttgaaatagaagacgtgaatgataatgcccccaaattc
tctaaaaatcaattccttcttgaaatacctgagcagactcctgtggatatcagattccct
ttggaaagtgcagaagatccagacataggagaaaatgctgttcagaactacacccttagt
cctaatgaacattttaggctggatgtgcaaagtcacagtgatggtaccaactatgcagaa
ttggtgttagagaaaccgctagaccgtgaggtgaatccacagatttcccttattctgtca
gcagttgatggaggaatcccaaaaagaactggaacagcacaaataatcattgatgttctg
gataacaatgataacttgcctcagtttccacaacctgagtacaaagtgaaactaaaggaa
aatagcccattggatactctggtcacaaaagtggaagccactgacagggatcttggttcc
aatgctcacatcacttattcattcagccaagtgccagaaaatgtcgtcagatcattcaag
ttaaacaaatattccggggagcttactactgcaggaacaattgattatgaagaaaataca
aattataagatcaacataagagctacagatggagggggactttctgcttactgcaaagtc
attgtagagattgaggatgagaacgacaatgctccagagattaccatcacatccatcacc
agtcccttacctgaggactctcccccagacacagtggtcgcccttttcagtgtcacagat
gtggactccggggacagtggcagaactgcctgcaccactgaggtaaacctgccatttgtg
cttaaacccacggagaacaactattaccagctggtgacccaacagcaactggacagagaa
caagcctctgagtataacattactatcacagccactgacagaggctctcccagactcact
tccacaagaatacttcatgttcaaatctcagatgtcaatgacaaccctccagtgtttgaa
aagccattctatcaaatgcagttaagagaaaacaatattcctggtcttctgatcaattcg
gtccatgctgttgatctggacacagcgcagaatgccaaagtgacctactcgcttttgcct
gggaaggtcaatgatggccccacatcctcttacatctccatcaactctgaaacggggaac
ctgtatgccatccggtctctggattatgaggaagtacaagatttccaggtgacggtgagg
gctgtggattcaggttcccctccactgagctccgaagttcccatccgcgttcaggtggtg
gatgaaaatgacaatgcccccttcatcctctaccctctccagaatggcacttccccctcg
aatgacctggttccccgaggggcagagactggctacctggtcaccaaggtggtggctgtg
gacagggattctgcgcagaactcttggctttcctaccagctgctgaaggccacagagccg
ggtctgttcacggtaggggcccagaatggagaagtgaccaccctgaggccggtcagcaac
cgagacagcttcaagcagaatctgattgtggtggtccgagacaatggccatcctccccag
tccacctctgccacgctcagaatccttctagtggacggcttctctgacccttatctgaaa
agtgtggctctcccaaaggaggaaacagcggaggaggaagaccccagcctgacgatgtat
ctgatcatctgcttggctgccatctcaagcatctttctcatttctgtggtggcgtttgtt
gtaatcaagttgcagaaacgtgaaaagttcacaggaacctacaactctggagccaatttc
ccggtgggaccagattcccaggagaactgtgcggatcctggtgctggatctctatcccag
gcttacaactatgaggtgtgcttagctggtgggtctctgaacagcgagttccggtttctc
aggcccctgtttcctgttttctctgtggagcctcctaacactcagctgaatccaaggagt
tccaatgattctgaaggtgtccccagtcatgcaggtgaaagtcaaaacattatccaggcc
agagcatcactctctgaagacgctgctcccagatctggagccccgggttgcattgttaat
caggcaactggggcaaatataaactgtagtcaaaatgactggcttacctatcaatag
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