Podarcis raffonei (Aeolian wall lizard): 128418417
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Entry
128418417 CDS
T09310
Symbol
SMG9
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9 isoform X1
KO
K18735
protein SMG9
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
praf03019
]
128418417 (SMG9)
Messenger RNA biogenesis [BR:
praf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
128418417 (SMG9)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
128418417
NCBI-ProteinID:
XP_053254041
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Position
8:complement(16107010..16123110)
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AA seq
510 aa
AA seq
DB search
MSESGHSQPGLYERRRRWNRDKELGHQSLSGPGRDRDYVPWDRERDRRDPVDEPVGTVMQ
KTPIILAKPPAERSKGTPTPTPAPAPAAAPAIEKPIVLMKSREEGKGPAGATEASAQPPA
AVAKVEKEGQRPTQPVYQIQNRGMGSTAPSSVMDPVVGQAKLLAPEKMKHSIKLVDDQMN
WCDSAIEYLLDQTDVLVVGVLGLQGTGKSMVMSLLSANQPEEDQRTYVFRTQSQEIKERG
GNQTSGIDFFITQERIIFLDTQPILSPSILDHLINNDRKLPPEYNLPHTYVEMQSLQIAA
FLFTVCHVVIVVQDWFTDLSLYRFLQTAEMVKPSTPSPSHESSGSSGSDEGTEYYPHIVF
LQNKAKRENFCPRNLKQMHLVIDKIMMHSHLKYKGTLSMLECNIFPGLPQSYLDSEVNLF
LLPFMDSDSDDALPRAAPGSGPLFSLLPGYKGHPSFQSLIAKLRSQIMSMSRPQLSHTIL
TEKNWFHYAARIWDGVKKSSALSEYSRLLA
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagtcagggcacagccagcctgggctgtacgagcgccgtcgccgctggaaccgt
gacaaggagctgggtcaccagagcctgtctgggccgggccgggatcgtgactacgtcccc
tgggatcgcgagcgagaccggcgggacccagtggatgagccggtgggaaccgtgatgcag
aagacacccatcatcctggccaagccacctgcagaaaggtccaaggggaccccaaccccc
actcctgctccagcgcctgccgccgccccggccatagagaagcccattgtgctgatgaag
tcgcgggaggaaggcaaaggtcccgcgggggcaacggaggcgtccgctcagccccctgct
gctgtcgccaaggtggagaaggagggccagcgccccacgcagccggtctaccagatccag
aatcgtggcatgggctcaactgcacccagcagcgtcatggaccctgtggttggccaggcc
aagctgttagccccagagaagatgaaacacagcatcaagctggtggacgaccaaatgaac
tggtgtgacagcgccattgagtatctcctggaccaaacggatgtgctggtggttggggtg
ctgggactgcagggtacaggcaaatccatggtgatgtcactgctgtccgccaaccagcct
gaagaggatcaaaggacatatgtgttccgcactcagagccaggagatcaaggagcgtggg
ggcaaccagaccagtggcatcgacttcttcatcacccaggagcgtatcatcttccttgac
actcagcccattctgagtccctccattctagatcacttgatcaacaatgaccgcaagctg
cctccggagtataatctacctcatacttacgttgagatgcagtccctccagattgctgct
ttcctcttcactgtctgccatgtggtcatcgtggtgcaagactggtttactgatctgagc
ctgtacaggtttttgcagacagctgagatggtaaagccctccactccatctcccagtcac
gaatccagcggctcctctggctcggatgagggcacagaatactacccacacattgttttt
ctccagaacaaagccaagagggagaacttctgcccccggaacctgaagcagatgcacctg
gttattgacaagattatgatgcactctcacctgaaatataagggcaccctctccatgctg
gaatgcaacatatttcctggccttcctcaaagttacctggactcggaggtcaacctgttc
ttactgccatttatggacagcgactcggatgatgctctgcccagggcagcccctgggagc
ggccccctcttctctctcctgcctgggtacaaggggcaccccagtttccagtctttgatt
gccaagcttcggagccagattatgtctatgtcccggcctcagctctctcacaccatcctg
accgaaaagaactggttccactatgcagctcgcatctgggatggtgtgaagaaatcctct
gctctctccgagtacagccgcctgctggcctga
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