Podarcis raffonei (Aeolian wall lizard): 128419267
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Entry
128419267 CDS
T09310
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128419267 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
praf03019
]
128419267 (EDC4)
Messenger RNA biogenesis [BR:
praf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128419267 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
128419267 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
WD40_CDC20-Fz
Beta-prop_HPS5
WD40_Prp19
Beta-prop_TEP1_2nd
Uteroglobin
NBCH_WD40
WDR55
DUF2218
CowN
ApoLp-III
Motif
Other DBs
NCBI-GeneID:
128419267
NCBI-ProteinID:
XP_053255692
LinkDB
All DBs
Position
8:complement(47093229..47127229)
Genome browser
AA seq
1400 aa
AA seq
DB search
MASASIDIEDATQHLRDILKLDRPSGSVNENQRSSTSYNGDLNGLLVPDPIASGDGASLT
KPVPQAVPLGALQEKQVICLSGDDSSTCMVITAKDVEIVASSDSSITSKARGSNKVKIQP
VARYDWEQKYYYGNLIAVSNAYLAYAIRGASNGSAMVRVLSVSTAERTLLKGFTGGVADL
AFAHLNSNQLACLDEAGNLFVWRLAMENGKIQEEILVNIKRPDGTPLNSSRRIIWCPFIP
DENEESCEEGSQTLALLHEDRAEVWDLDIIRANHNSWPVEVTSIKEGFIVVKGHSTRLSE
GALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQDP
EVPFWRFLITGAEQNRELKMWCTVSWTCLQTVRFSPDIFSSMSVLPSLKACLDLSAEYLI
LSDVQRKVLYVMELVQNQEEGKAYFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPAEE
ETDGLSAEGTQGTGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDTAAPIPPHGSHE
DFAFPDHLADLGAEGLGSEKGSVHGSQPDLRRISELSVPVDFLSPSNDTKPKLMTPDAFM
TPSTSLQQVTVSPGSSISSLTAVTTMSTSSVSDPSIPRPAEEVSLSPKMQLDSSLTLSGS
SGSLQTSPRSHSVLLPGLPDKLTPKAPIPVSPGNAPLALERQEVEPLVVPQSSPTRERSP
DVISSASTAMSQDIPEIASETLQRSFGGGPPGLPTEILDSNHHADSMASAASALHLLSPR
NRHSSEHSHHSLDMAPNEVDMLTAPSLLEAALPQENVASDAGVSQPWPAAPDITRETRNS
MADSPRNEVEEKHKSSYHRHSYHLLQHDSQDASAEQSDHDDEVASLASTSGGFSAKAAAQ
RLPVKDWKAKVSPRASPKLKRKGKKDDGDVQQSPRSFDQQVAPEYQDELLSLLRTQQREI
VELRQNQMELMQRLTDHLDAVQSSLMGHIERVVDSQQEQEQRRLDQALAEGQQRSGQLQE
HLSQQLSQSLSTAACNRLERTIREEMKKTVPPCVSKTLDPITGQLNNTIATKLTAIEGTL
KENVTKLVKSKNLTDAIARAAADALQGPMQSAYREAFQSVVLPAFEKSCQSMFQQINDTF
KQGTQEYIQQLESHMKSKKAREQDARDSVVSQLRQLVNNFQSTTDQLAATITASMHSEVQ
HQLHVIVGNMQESILAQVQRVIKGEVSMAMKEQQAAVTSSIMQAMRSAAGTPIPATHLDF
QSQQAHVLQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPQQVFGQHPCPLSQPVLLSL
IQQLSSDLGARTELKLNYLEEAVMHLDHSDPITRDHMGSVMNQVRQKLFQFLQAEPHNSL
SKPARRLMIMLQGLVTPSMS
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgcgagcatcgatatcgaggacgcgactcagcatctccgagacatcctcaag
ctggatcggccgagcggttcagtcaatgaaaaccagagatcatccacttcatacaatgga
gacctgaatggtttgctggtgccagatcccatagcatctggagatggagcttccttgacg
aagccagtaccccaagcagttcctctgggagcacttcaggagaagcaagtcatctgcctc
tctggagatgatagctctacctgtatggtgataactgctaaagatgttgagatagtagcc
agcagcgactctagcatcaccagtaaagctagagggagcaacaaggtaaaaatccagcca
gtggccaggtatgactgggagcagaaatattactatggtaacctgattgctgtttcaaat
gcctacctggcatatgccattagaggtgccagcaatggctctgcaatggttcgggtcttg
agcgttagcacggcagagcgaaccctgctgaagggcttcacaggtggagtggcagacctg
gcttttgctcacctcaactccaaccagctcgcttgcctggatgaagctggcaacctcttt
gtctggcgcctggccatggagaatggaaaaatccaagaggagatcctggtaaacatcaag
cgacctgatgggactcctctgaacagctcccggaggatcatatggtgtcccttcatccca
gatgagaatgaggagagctgtgaggaaggcagtcagaccctggcactcttacatgaggat
agggcagaggtttgggaccttgatataatccgagccaatcataattcatggccagtggaa
gtgaccagcatcaaagagggctttattgtggtaaaaggtcacagcacgcgtctgagtgag
ggagccctttcgccagatggaactgtcttggccaccgcaagccatgatggctttgtcaaa
ttctggcagatttacatagaagggcaggatgaaccaaggtgcctgcatgaatggaagcct
catgatggtagacctctctcctgcttgctgttctgtgacaaccataaaaaacaagatcca
gaagttcccttctggaggtttctcatcacaggagcagaacagaatcgagagctgaagatg
tggtgcactgtatcatggacctgcctacagactgtccggttttctccggatatattcagc
tccatgagtgtccttcctagtttgaaggcctgcctggatctctcagctgaatacctgatt
ttgagtgatgtgcagagaaaggtcttgtatgtgatggaacttgtgcagaaccaggaagag
ggcaaagcttatttcagctccatctcagagtttctgctgacccatccagtcctgagtttt
ggcatccaggtggtcagccgctgccgactgagacacacagaggtcctgccagcggaagag
gagaccgatggccttagtgcagaaggtactcaaggtactggagcggtagaatcagcagca
ggggtgcttatcaaactcttttgtgtccacaccaaggcccttcaggatgtgcagatcaga
ttccagcctcttcatagtccagacacagctgctccaattcctccccatggctcccatgaa
gattttgcattcccagatcaccttgctgacctgggcgcagaagggcttggatcagagaag
ggatccgtgcatggctcacagcctgacttgcgccgcatttcagagctatctgttcccgtg
gatttcctctccccttccaatgacacaaaacccaagctcatgactccagatgcattcatg
actcccagtacatctctgcagcaggtcacggtgtcacctggaagcagcattagttccctc
acagctgtcacaaccatgagcacttcttccgtcagtgacccctccattcccaggccggct
gaagaagtgtctctgagcccaaagatgcagctggatagtagccttaccctaagcggcagc
agtggaagtctgcagacaagccctcgaagtcattcagtcctcctccctggccttcctgac
aaactgactccaaaggcccccatcccggtttccccagggaatgcccctcttgcgctagag
cggcaggaagtggagcctctggtggtgccccagtcttcgcctactcgtgagcgctcccca
gacgtcatttcctctgcctctaccgccatgtctcaggacatcccagagattgcctctgag
accctgcagcgcagctttggaggcggcccacctgggctccctacagagatcctggattcc
aaccatcacgcggacagtatggcttccgcagcatcagccttgcacttgctctccccgcgg
aatcgtcacagctcggagcacagccatcactccttggacatggcccccaatgaagtggac
atgctgactgcgccttcgctgctggaggcagccttacctcaggaaaacgtggcttctgac
gctggcgtgagccaaccatggccagctgcccctgacatcaccagggagaccaggaacagc
atggcagacagccccaggaatgaagtggaagaaaaacacaagagctcctaccacaggcac
agctaccacctcctgcagcatgacagccaggatgccagcgctgaacaaagtgaccatgat
gatgaagttgcaagcttggcttctacgtctggtggatttagtgccaaagcagctgcacag
cgcctgcctgtgaaggactggaaagccaaagtgtcgcctcgagcctccccaaagctaaag
aggaaggggaagaaagatgatggggatgtgcaacagtccccaagatcctttgatcagcag
gtcgctcctgagtaccaggatgagctgttgtctcttctgaggacccagcagagggagatt
gttgaactgagacagaaccagatggaactcatgcagaggctcaccgaccacctggatgct
gtgcagagctccctcatgggccacattgagcgagtggtggattcccagcaagagcaggag
cagcggaggctggaccaggccttagctgagggacagcagcgcagtgggcaactgcaggag
catctgtcccagcagctttcccagtccctctccacggctgcctgcaaccggctggaaagg
accatccgcgaggagatgaaaaagacggtgcccccgtgcgtttccaagactttggatccc
atcactgggcagctgaataacaccattgccactaagctgacagccattgagggaacactg
aaggagaacgtcaccaaactggtgaaatcaaagaaccttacagatgccattgcccgggcg
gctgccgatgccttgcagggccccatgcagtcggcatacagggaggcgttccagagtgtg
gtgcttcctgcttttgagaagagctgtcaatcaatgttccagcagatcaatgacaccttc
aagcaaggcacacaagaatatattcagcagctggagagccacatgaagagtaagaaagcg
cgagagcaggatgcccgggactctgtggtgagccagctgcggcagctggtcaacaacttc
cagagcacaactgatcagctggcagccaccattacggccagcatgcactccgaggtgcag
catcagcttcatgtcatcgtgggcaacatgcaggagtccatcctggcccaagttcagcgg
gtgatcaaaggggaggtgagcatggccatgaaggagcagcaggctgctgtcacctccagc
atcatgcaggccatgcgctctgctgccggcactccaatccctgccactcacctcgacttc
cagtcccagcaggctcacgtgttacagctgttgcagcaggggcacctgaatcaagccttc
cagcaggctctcactgcagcagatttgaacctagtcctctacgtctgtgagacagttgac
cctcagcaagtgtttgggcagcatccttgcccactgtcccagcctgtcctcttgtctctc
attcagcagctctcctcagatttgggagctcggacagaactgaaactgaattacctggag
gaggcagtgatgcatctagaccacagtgaccccatcacccgcgaccacatgggctctgtg
atgaaccaagtgcggcagaagctcttccagttcctgcaggcagagcctcacaacagcctg
agcaagccggcccgccgactcatgatcatgcttcaaggcctggtcacacccagcatgtcc
taa
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integrated database retrieval system
